View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_low_8 (Length: 480)
Name: NF19838_low_8
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 7292616 - 7293070
Alignment:
| Q |
15 |
aagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtactgcagaaccaatagcaaatgggattgtttggagtgtt |
114 |
Q |
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| T |
7292616 |
aagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtactgcagaaccaatagcaaatgggattgtttggagtgtt |
7292715 |
T |
|
| Q |
115 |
gaaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaacctttgctgttcttttaaggaacattgttgataaaacttatactg |
214 |
Q |
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| T |
7292716 |
gaaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaaccttagctgttcttttaaggaacattgttgataaaacttatactg |
7292815 |
T |
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| Q |
215 |
gtgtttatcatgttgatatcactattcactttcacggttacccttttgatgttaagaagactcataagacaaaaaagtttgattctttagcatttaggag |
314 |
Q |
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| T |
7292816 |
gtgtttatcatgttgatatcactattcactttcacggttacccttttgatgttaagaagactcataagacaaaaaagtttgattctttagcatttaggag |
7292915 |
T |
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| Q |
315 |
tggttttcatgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaag |
414 |
Q |
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| T |
7292916 |
tggttttcatgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaag |
7293015 |
T |
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| Q |
415 |
gaatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtatgtttcat |
469 |
Q |
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| T |
7293016 |
gaatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtatgtttcat |
7293070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 467
Target Start/End: Original strand, 7288858 - 7289322
Alignment:
| Q |
15 |
aagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtactgcagaaccaatagcaaatgggattgtttggagtgtt |
114 |
Q |
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|||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7288858 |
aagacaatttgatcgaatttttggtgtttggcttgatggtgttgagttactcagaagctgtactgcagaaccaagacaaaatgggattgtttggagtgtt |
7288957 |
T |
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| Q |
115 |
gaaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaacctttgctgttcttttaaggaacattgttgataaaacttatactg |
214 |
Q |
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| T |
7288958 |
gaaaaagacattacaaggtatcaatctttgttgttgaatcctcaaaaaaatcaaactttagctgttttgttgagaaatattgttgataaaacatatactg |
7289057 |
T |
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| Q |
215 |
gtgtttatcatgttgatatcactattcactttcacggttacccttttgat-gtt-----aagaagactcataagacaaaaaagtttgattctttagcatt |
308 |
Q |
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| T |
7289058 |
gtgtttatcatgttgatattgctattcacttttacggttaccactgggctagttttagacagaacactcataagacaaaaaagttagattgtttttcatt |
7289157 |
T |
|
| Q |
309 |
taggagtggttt------tcatgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgat |
402 |
Q |
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| T |
7289158 |
taggagtgattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgat |
7289257 |
T |
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| Q |
403 |
gtgggtgtaaaggaatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtatgtttc |
467 |
Q |
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| T |
7289258 |
gtgggtttgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttc |
7289322 |
T |
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