View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_17 (Length: 401)
Name: NF19839_high_17
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 36932743 - 36933116
Alignment:
| Q |
14 |
catataaccaaacttaacccaattggtatcaattttgcttacaggctgcatgcataattttttactagcttataaaattcgatgataagcaacataaatt |
113 |
Q |
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| T |
36932743 |
catataaccaaacttaacccaattgatatcaattttccttacaaaa-gcatacataaatttttactagcttataaaattcgatgataaacaacataaatt |
36932841 |
T |
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| Q |
114 |
agtttttgaacttataacttatcatgtttactttccaatctacttttattatcttaattgaaaaaactaaatgttaattcatattaattacacttttgat |
213 |
Q |
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| T |
36932842 |
agtttttgaacttataacttatcatatttactttccaatctacttttattatcttaattgaaaaaattaaatattaattcatatcaattatacttttgat |
36932941 |
T |
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| Q |
214 |
ctccaattttaccccctttcacgaaaaaagtccccttattttaaaatcgtgtca--nnnnnnnatgatgtgacatgcaagatgatgatgtgaagnnnnnn |
311 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36932942 |
ctccaattttaccctttttcacgaaaagagtccccttattttaaaatcgtgtcatttttttttatgatgtgacatgcaagatgatgatgtgaaaaaaaaa |
36933041 |
T |
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| Q |
312 |
nnncactattttagagaaatatgaaaaatacacttgtaaacatgttcttatttcactttatatttgctagtatta |
386 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36933042 |
gcacttctttttagagaaatatgaaaaatacacttgtaaacatgttcttatttcactttatatttgctagtatta |
36933116 |
T |
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