View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_18 (Length: 398)
Name: NF19839_high_18
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 3765392 - 3765762
Alignment:
| Q |
9 |
tattattctgaaactatacatcaaattcttacacactctaacaccatatgcaaattaatgaaaacatgcatgtattacataaattgaattgccctacaga |
108 |
Q |
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| T |
3765392 |
tattgttctgaaactatacatcaaattcttacacactctaacaccatatgcaaattaatgaaaacatgcatgtattacataaattgaattgccctacaga |
3765491 |
T |
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| Q |
109 |
ttaaccttaaagtcaaatctggactaataatattagcgcaatactttggaggtgagagcatgcaagagtcctttcctttcctttcctttagggacgacat |
208 |
Q |
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| T |
3765492 |
ttaaccttaaagtcaaatctggactaataatattagcgcaatactttggaggtgagagcatgcaagag-----tcctttcctttcctttagggacgacat |
3765586 |
T |
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| Q |
209 |
gctatgccatgaccaggaataaatctagcattatcttcagtgtacacatgagtttcattcttcagcctgaaacaatagtaattttgatgtcaaattctat |
308 |
Q |
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| T |
3765587 |
gctatgccatgaccaggaataaatctagcattatcttcagtgtacacatgagtttcattcttcagcctgaaacaatagtaattttgatgtcaaattctat |
3765686 |
T |
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| Q |
309 |
gaaattagctagttggaaactatggattaactag-aaatggttaaattacaccatatatcttttaagtttgaggtt |
383 |
Q |
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| T |
3765687 |
gaaattagctagttggaaactatggattaactagaaaatggttaaattacagcatatgtcttttaagtttgaggtt |
3765762 |
T |
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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 48388062 - 48388124
Alignment:
| Q |
221 |
ccaggaataaatctagcattatcttcagtgtacacatgagtttcattcttcagcctgaaacaa |
283 |
Q |
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| T |
48388062 |
ccaggaatgaatctagcattttcttcagtgtacacatgagtttcattctgaagcctgaaacaa |
48388124 |
T |
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