View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_high_19 (Length: 386)

Name: NF19839_high_19
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_high_19
NF19839_high_19
[»] chr1 (8 HSPs)
chr1 (49-376)||(46903819-46904146)
chr1 (146-234)||(46813161-46813249)
chr1 (59-107)||(4817213-4817261)
chr1 (59-103)||(11247864-11247908)
chr1 (65-103)||(18473743-18473781)
chr1 (65-110)||(5602608-5602653)
chr1 (54-95)||(46792979-46793020)
chr1 (57-97)||(7549686-7549726)
[»] chr8 (1 HSPs)
chr8 (127-312)||(6134476-6134662)
[»] chr7 (5 HSPs)
chr7 (127-306)||(41895203-41895383)
chr7 (57-116)||(25003441-25003500)
chr7 (57-117)||(20954759-20954819)
chr7 (57-96)||(23434796-23434835)
chr7 (57-103)||(46994403-46994449)
[»] chr5 (1 HSPs)
chr5 (65-116)||(5630575-5630626)
[»] chr3 (1 HSPs)
chr3 (65-116)||(21175572-21175623)
[»] chr2 (3 HSPs)
chr2 (65-103)||(4024783-4024821)
chr2 (66-112)||(30706354-30706400)
chr2 (60-117)||(44152311-44152368)
[»] chr4 (3 HSPs)
chr4 (84-117)||(26001510-26001543)
chr4 (71-103)||(37586520-37586552)
chr4 (54-102)||(39401940-39401988)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 49 - 376
Target Start/End: Complemental strand, 46904146 - 46903819
Alignment:
Q  49 aaaatcttactttttgattggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaagaggcatgtgattcatcgcgagagttttcttc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46904146 aaaatcttactttttgattggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaagaggcatgtgattcatcgcgagagttttcttc 46904047  T
Q  149 aagaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctggccacaaatcacggaagttggtgggtggaaataaaattggacggacgcagcta 248  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46904046 aagaagtgctcacgaaatccttgtcaaccaatcaaaatctggctctggccacaaatcacggaagttggtgggtggaaataaaattggacggacccagcta 46903947  T
Q  249 cagtgataattgtgctcgggatcttttcgagacaacatatttgctacaagtaacatttttcaataaaagaaagtgttgaaaagtgaatatccttaaaatt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46903946 cagtgataattgtgctcgggatcttttcgagacaacatatttgctacaagtaacatttttcaataaaagaaagtgttgaaaagtgaatatccttaaaatt 46903847  T
Q  349 actcaagtgattaatcgttatacctttg 376  Q
    ||||||||||||||||||||||||||||    
T  46903846 actcaagtgattaatcgttatacctttg 46903819  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 46813249 - 46813161
Alignment:
Q  146 ttcaagaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctggccacaaatcacggaagttggtgggtggaaataaaattg 234  Q
    |||||||||| ||||||||||| |||  ||||||| ||||| || |  ||||||||| |||||||||||||||| ||||||||||||||    
T  46813249 ttcaagaagttctcgcgaaatcgttggtaaccaatgaaaatatgctcatggccacaattcacggaagttggtggatggaaataaaattg 46813161  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 4817213 - 4817261
Alignment:
Q  59 tttttgattggtttaaattatggtgggtctcacactttgaaaatgagtt 107  Q
    ||||| ||||| ||||||| |||||| ||||||||||||||||||||||    
T  4817213 ttttttattggcttaaattgtggtggatctcacactttgaaaatgagtt 4817261  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 11247908 - 11247864
Alignment:
Q  59 tttttgattggtttaaattatggtgggtctcacactttgaaaatg 103  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  11247908 tttttaattggcttaaatcatggtgggtctcacactttgaaaatg 11247864  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 18473781 - 18473743
Alignment:
Q  65 attggtttaaattatggtgggtctcacactttgaaaatg 103  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  18473781 attggcttaaatcatggtgggtctcacactttgaaaatg 18473743  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 5602608 - 5602653
Alignment:
Q  65 attggtttaaattatggtgggtctcacactttgaaaatgagtttca 110  Q
    ||||||||||||||  ||||||||||||||||| |||| |||||||    
T  5602608 attggtttaaattaaagtgggtctcacactttggaaataagtttca 5602653  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 46793020 - 46792979
Alignment:
Q  54 cttactttttgattggtttaaattatggtgggtctcacactt 95  Q
    |||||||||| ||||| |||||| ||||||||||||||||||    
T  46793020 cttacttttttattggcttaaatcatggtgggtctcacactt 46792979  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 7549726 - 7549686
Alignment:
Q  57 actttttgattggtttaaattatggtgggtctcacactttg 97  Q
    ||||||| ||||| ||||||||||||| |||||||||||||    
T  7549726 actttttaattggcttaaattatggtgagtctcacactttg 7549686  T

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Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 127 - 312
Target Start/End: Complemental strand, 6134662 - 6134476
Alignment:
Q  127 attcatcgcgagagttttcttcaagaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctggccacaaatcacggaagttggtgggtggaaa 226  Q
    |||||| |||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||     
T  6134662 attcatagcgagaggattcttcatgaagtgctcgcaaaatccttgtcaaccaatcaaaatctggttctgtacacaaatcacggaagtt-gtgggtggaag 6134564  T
Q  227 taaaattggacggacgcagctacagtgataattgtg--ctcgggatcttttcgagacaacatatttgctacaagtaacatttttcaat 312  Q
    |||||||||| || | |||||||| | |||||||||  |||| ||||| |||| ||||| |||||  ||| ||||| ||||| |||||    
T  6134563 taaaattggatgggcccagctacaataataattgtgctctcgtgatctgttcgggacaatatattctctagaagtagcatttctcaat 6134476  T

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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 41895383 - 41895203
Alignment:
Q  127 attcatcgcgagagttttcttcaagaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctggccacaaatcacggaagttggtgggtggaaa 226  Q
    |||||| |||||||  ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||  |||||||||| |||||| ||||||||||     
T  41895383 attcatagcgagaggattcttcacgaagcgctcgcgaaatccttctcaaccaatcaaaatctggttctgtacacaaatcacagaagtt-gtgggtggaag 41895285  T
Q  227 taaaattggacggacgcagctacagtgataattgtg--ctcgggatcttttcgagacaacatatttgctacaagtaacattt 306  Q
    |||||||||| ||   |||||||  | |||||||||  |||| ||||| |||||||||| ||||| |||| ||||| |||||    
T  41895284 taaaattggatgggtccagctaccctcataattgtgctctcgtgatctgttcgagacaatatattcgctagaagtagcattt 41895203  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 25003500 - 25003441
Alignment:
Q  57 actttttgattggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaa 116  Q
    ||||||| ||||| |||||||||| |||||||||||||||| |||||| || ||||||||    
T  25003500 acttttttattggcttaaattatgatgggtctcacactttggaaatgacttccattcaaa 25003441  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 20954819 - 20954759
Alignment:
Q  57 actttttgattggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaag 117  Q
    ||||||| ||||| |||||| |||||| ||||||||||||  ||||||||| |||||||||    
T  20954819 acttttttattggcttaaatcatggtgagtctcacactttagaaatgagttccattcaaag 20954759  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 23434835 - 23434796
Alignment:
Q  57 actttttgattggtttaaattatggtgggtctcacacttt 96  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  23434835 acttttttattggcttaaattatggtgggtctcacacttt 23434796  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 46994403 - 46994449
Alignment:
Q  57 actttttgattggtttaaattatggtgggtctcacactttgaaaatg 103  Q
    ||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  46994403 acttttttattggcttaaatcatggtgggtctcacactttggaaatg 46994449  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 5630626 - 5630575
Alignment:
Q  65 attggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaa 116  Q
    ||||| |||||||||||||||||||| ||||||||||||  |||||||||||    
T  5630626 attggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaa 5630575  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 21175623 - 21175572
Alignment:
Q  65 attggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaa 116  Q
    ||||| |||||||||||||||||||| ||||||||||||  |||||||||||    
T  21175623 attggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaa 21175572  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 4024821 - 4024783
Alignment:
Q  65 attggtttaaattatggtgggtctcacactttgaaaatg 103  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  4024821 attggcttaaatcatggtgggtctcacactttgaaaatg 4024783  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 30706400 - 30706354
Alignment:
Q  66 ttggtttaaattatggtgggtctcacactttgaaaatgagtttcatt 112  Q
    ||||||||||||| ||||||||||| || ||||||||||||| ||||    
T  30706400 ttggtttaaattaaggtgggtctcatacattgaaaatgagttccatt 30706354  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 44152368 - 44152311
Alignment:
Q  60 ttttgattggtttaaattatggtgggtctcacactttgaaaatgagtttcattcaaag 117  Q
    |||| |||||||||||| | ||||||||||||| ||| ||||| ||||| ||||||||    
T  44152368 tttttattggtttaaatcaaggtgggtctcacattttaaaaataagtttaattcaaag 44152311  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 26001543 - 26001510
Alignment:
Q  84 ggtctcacactttgaaaatgagtttcattcaaag 117  Q
    ||||||||||||||||||||||||||||| ||||    
T  26001543 ggtctcacactttgaaaatgagtttcatttaaag 26001510  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 37586520 - 37586552
Alignment:
Q  71 ttaaattatggtgggtctcacactttgaaaatg 103  Q
    |||||| ||||||||||||||||||||||||||    
T  37586520 ttaaatcatggtgggtctcacactttgaaaatg 37586552  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 39401988 - 39401940
Alignment:
Q  54 cttactttttgattggtttaaattatggtgggtctcacactttgaaaat 102  Q
    |||||||||| ||||| |||||| ||| ||||||||||||||| |||||    
T  39401988 cttacttttttattggcttaaatcatgatgggtctcacactttaaaaat 39401940  T

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