View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19839_high_2 (Length: 947)
Name: NF19839_high_2
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 763; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 15 - 928
Target Start/End: Complemental strand, 35355149 - 35354232
Alignment:
| Q |
15 |
aacctgtggaaatatatcacggacaaaataaacaattagcatatggaatgtcactagaaattaggaagctcattagcattgttgaacttacgatggtgtg |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35355149 |
aacctgtggaaatatatcacggagaaaataaacaattagcatatggaatgtgactagaaattaggaagctcgttagcattgttgaacttacgatggtgtg |
35355050 |
T |
|
| Q |
115 |
tatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
35355049 |
tatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaatgaactcaaagttgcaatgacccatgttgttcatgaaatcaatgaaaaaga |
35354950 |
T |
|
| Q |
215 |
tatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgg |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354949 |
catagccatatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgg |
35354850 |
T |
|
| Q |
315 |
gtgtgtcacagctgtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagnnnnnnngt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35354849 |
gtgtgtcacagctgtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagaaaaaaagt |
35354750 |
T |
|
| Q |
415 |
tcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35354749 |
tcatacaagtgataggctcagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagta |
35354650 |
T |
|
| Q |
515 |
taaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcct |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
35354649 |
taaaaactccactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcct |
35354550 |
T |
|
| Q |
615 |
atataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattat |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35354549 |
atataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattat |
35354450 |
T |
|
| Q |
715 |
ttaaaggg----nnnnnnnnnnnnnnnttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcc |
810 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354449 |
ttaaagggaaaataaaaaaaaaaaaaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcc |
35354350 |
T |
|
| Q |
811 |
tttagcagtttggtaacgtgaaatagaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttca |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354349 |
tttagcagtttggtaacgtgaaatagaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttca |
35354250 |
T |
|
| Q |
911 |
ccccatatgaaagagtac |
928 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35354249 |
ccccatatgaaagagtac |
35354232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 99 - 333
Target Start/End: Complemental strand, 35381071 - 35380837
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35381071 |
aacttacgatggtgtgtatgagagatactttaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatattgttcatg |
35380972 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
|
|||||||||||||||||||| ||| | | ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35380971 |
aaatcaatgtaaaatatataaccatacaatgcagccacggaagatttattgatgaacaatgttgtcaacattgggatagcaaaaagtgtaaaatatgaca |
35380872 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtcaaa |
333 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
35380871 |
aatgctccgcaaatgggtgtgcgacagctgtcaaa |
35380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 379 - 661
Target Start/End: Complemental strand, 35379289 - 35379007
Alignment:
| Q |
379 |
cacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatag |
478 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
35379289 |
cacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatag |
35379190 |
T |
|
| Q |
479 |
ataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccat |
578 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35379189 |
ataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccat |
35379090 |
T |
|
| Q |
579 |
ggtaaattagaggctataggaaatatcatgtatcctatataatatactagtgcagtgaacaatatttgatcatccctgcaaat |
661 |
Q |
| |
|
||||| ||||| || ||||||||||| | |||| ||||| ||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35379089 |
ggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtacagtgaacaacatttgatcatccctgcaaat |
35379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 413 - 662
Target Start/End: Complemental strand, 35369896 - 35369647
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
512 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35369797 |
T |
|
| Q |
513 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
612 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
35369796 |
tataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatc |
35369697 |
T |
|
| Q |
613 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatg |
662 |
Q |
| |
|
|||| || |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35369696 |
ctatgtagtataacagtgcagtgaacaaaatttggtcatccctgcaaatg |
35369647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 99 - 330
Target Start/End: Complemental strand, 35370509 - 35370278
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35370509 |
aacttacgatggtgtgtaagagagatacttcaattggggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatg |
35370410 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
|
||||||||| |||| | ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35370409 |
aaatcaatgaaaaagacatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgaca |
35370310 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtc |
330 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
|
|
| T |
35370309 |
aatgctcggcaaatgggtgtgccacagctgtc |
35370278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 738 - 927
Target Start/End: Complemental strand, 35369456 - 35369267
Alignment:
| Q |
738 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
837 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
|
|
| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
|
| Q |
838 |
aatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagta |
927 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||||| |||||| || | | ||| ||||||||| |||||||||||||||| |
|
|
| T |
35369356 |
aatccaaatctgattgtgtagcattctgaccaatataaaaggacatatgagatattgtattgggtccctttcaacccatatgaaagagta |
35369267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 755 - 923
Target Start/End: Complemental strand, 35378323 - 35378155
Alignment:
| Q |
755 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
854 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
|
|
| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
855 |
gtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaag |
923 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||| ||||| |||||||||||||||||||||| |
|
|
| T |
35378223 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaag |
35378155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 1e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 413 - 682
Target Start/End: Complemental strand, 19684317 - 19684048
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
512 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatag |
19684218 |
T |
|
| Q |
513 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
612 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | || |||||||||||| |||| |
|
|
| T |
19684217 |
tataagaactccactggtccagcatgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaa |
19684118 |
T |
|
| Q |
613 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
682 |
Q |
| |
|
||||||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
19684117 |
gtatataaaacattaatgcagtgaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 413 - 682
Target Start/End: Original strand, 19630480 - 19630749
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
512 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatag |
19630579 |
T |
|
| Q |
513 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
612 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
19630580 |
tataagaactccactggtccagcatgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtata |
19630679 |
T |
|
| Q |
613 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
682 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630680 |
gtatatagaaggttagtgcagtcaacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 99 - 331
Target Start/End: Complemental strand, 19684715 - 19684483
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19684715 |
aacttacgatggtgtgtatgtgagatacttcaattggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcata |
19684616 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
|
||||| |||||||| ||||| ||| | | |||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
19684615 |
aaatcgatgtaaaagatataaccatacaatgcaaccacactcgattttttcatgaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgcca |
19684516 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtca |
331 |
Q |
| |
|
| ||| |||||||| |||||||| ||||||| |
|
|
| T |
19684515 |
acatctcagcaaatggatgtgtcaccgctgtca |
19684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 19630111 - 19630344
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19630111 |
aacttacgatggtgtgtacgagagatacttcaataggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcata |
19630210 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttg-tcaacattggtatagcaaaaagtgtaaaatatgac |
297 |
Q |
| |
|
||||| |||||||| ||||| ||| | | ||||| | ||| |||||||| | ||||| ||||| |||| ||||| ||| ||||||||| ||||||| | |
|
|
| T |
19630211 |
aaatcgatgtaaaagatataaccatacaccgcagcaatagacgatttttttacgaacattgttgctcaatattgggataaaaaaaagtgtgaaatatgcc |
19630310 |
T |
|
| Q |
298 |
aaatgctccgcaaatgggtgtgtcacagctgtca |
331 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| |
|
|
| T |
19630311 |
aatatctcagcaaatgggtgtatcacagctgtca |
19630344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 746 - 887
Target Start/End: Complemental strand, 19683783 - 19683642
Alignment:
| Q |
746 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
845 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
846 |
tctggttgtgtagcattctgatcaacataaaaggaaatatga |
887 |
Q |
| |
|
|||| || ||||||||||||| ||| ||| |||| ||||||| |
|
|
| T |
19683683 |
tctgattatgtagcattctgaccaatatataagggaatatga |
19683642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 746 - 887
Target Start/End: Original strand, 19632560 - 19632701
Alignment:
| Q |
746 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
845 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
|
|
| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
846 |
tctggttgtgtagcattctgatcaacataaaaggaaatatga |
887 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
19632660 |
tctggctgtgtagcattctcacaaacatataaggaaatatga |
19632701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 533
Target Start/End: Original strand, 2258460 - 2258558
Alignment:
| Q |
435 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtcca |
533 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| ||||||||| | |||||||||||||||| |
|
|
| T |
2258460 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 435 - 538
Target Start/End: Original strand, 2280450 - 2280553
Alignment:
| Q |
435 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccag |
534 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| |||||| || | ||| || |||| ||||| |
|
|
| T |
2280450 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccag |
2280549 |
T |
|
| Q |
535 |
catg |
538 |
Q |
| |
|
|||| |
|
|
| T |
2280550 |
catg |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 2251453 - 2251396
Alignment:
| Q |
153 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
210 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2251453 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2251396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 2256744 - 2256801
Alignment:
| Q |
153 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
210 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2256744 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2256801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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