View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_21 (Length: 376)
Name: NF19839_high_21
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 5812162 - 5811801
Alignment:
| Q |
1 |
ctccctcgtcgtgttttctctgattcctctaggtgtgcgccctctaaggccttctttcacggacttctaaccggtctagaacaaaagaaaatacagaaag |
100 |
Q |
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| T |
5812162 |
ctccctcgtcgtgttttctctgattcctctaggtgtgcgccctctaaggccttctgtcacggacttctaaccggtctagaacaaaagaaaatacagaaag |
5812063 |
T |
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| Q |
101 |
aaaatgagaaagatagtgcagatgtaacagcaatatttgagtgctatgggaccctccaacaattttctttacctgatatgtttctaagtcataaagggaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5812062 |
aaaatgagaaagataatgcagatgtaacagcaatatttgagtgctatgggaccctccaacaattttctttacctgat--gtttctaagtcataaagggaa |
5811965 |
T |
|
| Q |
201 |
aaccctccatcaactacttccacttcagttatttttaaaccaaattaccccacacaaatatttgctttatgcaattatactaatccacccagctaccatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811964 |
aaccctccatcaactacttccacttcagttatttttaaaccaaattaccccacacaaatatttgctttatgcaattatactaatccacccagctaccatc |
5811865 |
T |
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| Q |
301 |
aattacattttcattctattttccacaagacttgattaaaaaatcattattatatctatatttt |
364 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811864 |
aattacatcttcattctattttccacaagacttgattaaaaaatcattattatatctatatttt |
5811801 |
T |
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