View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_high_22 (Length: 371)

Name: NF19839_high_22
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_high_22
NF19839_high_22
[»] chr5 (19 HSPs)
chr5 (1-356)||(31570749-31571104)
chr5 (260-342)||(30786246-30786328)
chr5 (260-322)||(38450025-38450087)
chr5 (260-342)||(12042216-12042298)
chr5 (260-342)||(18191888-18191970)
chr5 (274-342)||(17037536-17037604)
chr5 (274-342)||(31069001-31069069)
chr5 (260-342)||(9333600-9333682)
chr5 (260-342)||(9354428-9354510)
chr5 (281-341)||(5079104-5079164)
chr5 (260-302)||(42076046-42076088)
chr5 (259-342)||(10869416-10869498)
chr5 (258-324)||(12004567-12004632)
chr5 (260-342)||(19984974-19985056)
chr5 (260-321)||(17535350-17535411)
chr5 (274-331)||(23679434-23679491)
chr5 (274-331)||(23855320-23855377)
chr5 (176-212)||(31592909-31592945)
chr5 (176-259)||(31603080-31603163)
[»] chr7 (10 HSPs)
chr7 (260-342)||(26608578-26608660)
chr7 (260-342)||(26619142-26619223)
chr7 (262-342)||(30089716-30089796)
chr7 (260-342)||(26621130-26621212)
chr7 (274-341)||(26205455-26205522)
chr7 (274-341)||(26225018-26225085)
chr7 (281-341)||(4685443-4685503)
chr7 (274-341)||(9242524-9242591)
chr7 (260-321)||(14803120-14803181)
chr7 (260-321)||(15250114-15250175)
[»] chr4 (12 HSPs)
chr4 (259-339)||(4881111-4881191)
chr4 (259-342)||(4904179-4904262)
chr4 (259-325)||(4923689-4923755)
chr4 (259-342)||(37751029-37751111)
chr4 (274-341)||(53300344-53300411)
chr4 (258-342)||(24559034-24559118)
chr4 (274-341)||(47066074-47066141)
chr4 (263-341)||(26075290-26075368)
chr4 (274-331)||(1685002-1685059)
chr4 (283-336)||(43600269-43600322)
chr4 (274-331)||(1152037-1152094)
chr4 (290-342)||(48464049-48464101)
[»] chr8 (18 HSPs)
chr8 (260-342)||(14997600-14997682)
chr8 (274-341)||(5528736-5528803)
chr8 (259-341)||(6801870-6801952)
chr8 (260-342)||(29553608-29553690)
chr8 (281-341)||(25638807-25638867)
chr8 (281-341)||(28249115-28249175)
chr8 (263-342)||(5000661-5000740)
chr8 (260-331)||(7292813-7292883)
chr8 (274-341)||(17634511-17634578)
chr8 (259-342)||(31347327-31347410)
chr8 (260-342)||(6403572-6403654)
chr8 (283-341)||(45356152-45356210)
chr8 (274-331)||(19369960-19370017)
chr8 (274-331)||(19448441-19448498)
chr8 (274-331)||(19532578-19532635)
chr8 (260-324)||(29118587-29118650)
chr8 (274-341)||(25637637-25637704)
chr8 (260-342)||(5650984-5651066)
[»] chr1 (12 HSPs)
chr1 (260-342)||(18308127-18308209)
chr1 (260-347)||(39368674-39368761)
chr1 (274-342)||(37097379-37097447)
chr1 (259-341)||(5911704-5911786)
chr1 (260-342)||(28636882-28636964)
chr1 (259-341)||(897433-897515)
chr1 (260-318)||(17112904-17112962)
chr1 (274-341)||(16222771-16222838)
chr1 (274-341)||(51758746-51758813)
chr1 (260-342)||(12189931-12190013)
chr1 (281-339)||(15214327-15214385)
chr1 (290-338)||(13208621-13208669)
[»] chr2 (10 HSPs)
chr2 (261-342)||(7702409-7702490)
chr2 (281-342)||(40016591-40016652)
chr2 (260-342)||(24479131-24479213)
chr2 (274-341)||(30266996-30267063)
chr2 (265-342)||(11017441-11017518)
chr2 (281-341)||(31342756-31342816)
chr2 (274-341)||(44920951-44921017)
chr2 (259-341)||(41573371-41573453)
chr2 (276-341)||(7718180-7718245)
chr2 (269-337)||(27151276-27151343)
[»] chr3 (14 HSPs)
chr3 (259-338)||(36035450-36035529)
chr3 (260-342)||(27259484-27259566)
chr3 (259-341)||(36034997-36035079)
chr3 (259-340)||(5498456-5498537)
chr3 (261-342)||(26707839-26707920)
chr3 (258-342)||(9633481-9633565)
chr3 (274-341)||(1627987-1628054)
chr3 (286-342)||(2943253-2943309)
chr3 (274-341)||(13845985-13846052)
chr3 (259-342)||(16457370-16457453)
chr3 (283-341)||(2550168-2550226)
chr3 (281-341)||(1654576-1654636)
chr3 (281-341)||(7407794-7407854)
chr3 (281-341)||(1613253-1613313)
[»] chr6 (16 HSPs)
chr6 (260-342)||(23264535-23264619)
chr6 (274-340)||(12591826-12591892)
chr6 (264-342)||(23904391-23904469)
chr6 (281-342)||(16734805-16734866)
chr6 (260-342)||(29667954-29668038)
chr6 (269-333)||(4591138-4591202)
chr6 (281-341)||(11936807-11936867)
chr6 (263-342)||(9631194-9631273)
chr6 (275-337)||(15690432-15690494)
chr6 (274-331)||(14669396-14669453)
chr6 (281-341)||(6684094-6684154)
chr6 (281-341)||(15361715-15361775)
chr6 (274-330)||(17719774-17719830)
chr6 (260-342)||(1942548-1942630)
chr6 (262-324)||(6673675-6673737)
chr6 (259-339)||(4485607-4485687)
[»] scaffold0576 (1 HSPs)
scaffold0576 (281-341)||(6699-6759)
[»] scaffold0684 (1 HSPs)
scaffold0684 (274-331)||(797-854)


Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 31570749 - 31571104
Alignment:
Q  1 aaattaaattttagatggagaaggaatttattccaagaggaaattgttttggaaaaggaaatagtaattactaagagcttagagcaagtattgcggttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570749 aaattaaattttagatggagaaggaatttattccaagaggaaattgttttggaaaaggaaatagtaattactaagagcttagagcaagtattgcggttga 31570848  T
Q  101 agatcgttatataacagaaactctgggagtttgaaaatgtattgggttgttccattactcttcataatgaaacatttaggttgattagcctcccactccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570849 agatcgttatataacagaaactctgggagtttgaaaatgtattgggttgttccattactcttcataatgaaacatttaggttgattagcctcccactccc 31570948  T
Q  201 aaatacaaattttctatatagagagagtacagaactcaattagaaaatgtctaagaagtcactacaacataattgacatctagtaacacttgaaaattgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570949 aaatacaaattttctatatagagagagtacagaactcaattagaaaatgtctaagaagtcactacaacataattgacatctagtaacacttgaaaattgt 31571048  T
Q  301 tattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaatt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31571049 tattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaatt 31571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 30786246 - 30786328
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||| | ||||||||||||||||||||||| | | || |||||||||||||||||||| || ||||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacat 30786328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 38450087 - 38450025
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgtta 322  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||    
T  38450087 cactacaacataattgacatctagtaacacatgaaaattgttaccaaatcaagaaaaatgtta 38450025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 12042298 - 12042216
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||| | ||| ||||| | ||||||||||| | |||| |||||||||||||||||||| || ||||||||||    
T  12042298 cactacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacat 12042216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 18191970 - 18191888
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||| |||||||| || |||||||| ||||||||||| | ||||  ||||||||||||||| |||||| ||||||||||    
T  18191970 cactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacat 18191888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 17037536 - 17037604
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||| ||||||||||||||||| || | |||| |||||||||||||||| |||||| ||||||||||    
T  17037536 tgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacat 17037604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 31069069 - 31069001
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||| ||||||||||| |||||||| | |||| |||||||||||||||| |||||| ||||||||||    
T  31069069 tgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacat 31069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 9333682 - 9333600
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||| ||||| || | |||||| ||||||||||| |  ||| |||||||||||||||| |||||| ||||||||||    
T  9333682 cactacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacat 9333600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 9354510 - 9354428
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||| ||||| || |||||||| ||||||||||| | | || |||||||||||||||| |||||| ||| ||||||    
T  9354510 cactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacat 9354428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 5079164 - 5079104
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  5079164 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 5079104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 42076046 - 42076088
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgtta 302  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  42076046 cactacaacataattgagatctagtaacaattgaaaattgtta 42076088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 10869416 - 10869498
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||||||| ||||||  ||| || ||||||| || |||| || ||||| ||||||| |||||| ||||||||||    
T  10869416 tcactacaacataattgagatctagatacaattaaaaattg-tactaaatcatgaaaattgttactaattaaatttagtaacat 10869498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 12004632 - 12004567
Alignment:
Q  258 gtcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact 324  Q
    ||||||||||||||||||| || |||||||| ||| ||||| | | |||| ||||||||||||||||    
T  12004632 gtcactacaacataattgaaatttagtaacaattg-aaattctaactaaatcaagaaaaatgttact 12004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 19984974 - 19985056
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||||   | ||||||||||| |||||| || | |||| |||| ||||||||||| |||| | ||||||||||    
T  19984974 cactacaacataattatgaactagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacat 19985056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 17535350 - 17535411
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgtt 321  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| | |||| |||||||||||||    
T  17535350 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 23679434 - 23679491
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||| | ||||||    
T  23679434 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23679491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 23855377 - 23855320
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||| | ||||||    
T  23855377 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23855320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 31592909 - 31592945
Alignment:
Q  176 ttaggttgattagcctcccactcccaaatacaaattt 212  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  31592909 ttaggttgattagcctcccaatcctaaatacaaattt 31592945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 31603080 - 31603163
Alignment:
Q  176 ttaggttgattagcctcccactcccaaatacaaattttctatatagagagagtacagaactc-aattagaaaatgtctaagaagt 259  Q
    |||||||||||||||| ||| ||| ||||||||| ||||||||| |||  |||||| ||||| ||||| ||||| || |||||||    
T  31603080 ttaggttgattagccttccaatcctaaatacaaa-tttctatatggagcaagtacataactcaaattaaaaaatttccaagaagt 31603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 26608660 - 26608578
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  26608660 cactacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacat 26608578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 26619223 - 26619142
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||| ||||||    
T  26619223 cactacaacataattgacatctagtaacacttg-aaattgttactaaatcaagaaaaatgttactgattaaatttattaacat 26619142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 30089716 - 30089796
Alignment:
Q  262 ctacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| | ||||||||||    
T  30089716 ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacat 30089796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 26621212 - 26621130
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||| |||| |||||||||||||||||||||||||||| ||||  |||||||||||||||||||||| |||| |||||    
T  26621212 cactacaacttaatggacatctagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacat 26621130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 26205522 - 26205455
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||| ||||||||||||| | | |||| |||||||||||||||| |||||| |||||||||    
T  26205522 tgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaaca 26205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 26225085 - 26225018
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| || ||||||||||||||||| | |||| ||||||||||| |||| |||||| |||||||||    
T  26225085 tgacatttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaaca 26225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 4685503 - 4685443
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||| | |||||| |||| ||||    
T  4685503 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 4685443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 9242591 - 9242524
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| ||| |||||||||||||||| | |||| |||||||| ||||||| |||||| || ||||||    
T  9242591 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaaca 9242524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 14803181 - 14803120
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgtt 321  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| | |||| |||||||||||||    
T  14803181 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 15250175 - 15250114
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgtt 321  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| | |||| |||||||||||||    
T  15250175 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 4881191 - 4881111
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaa 339  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  4881191 tcactacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaa 4881111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 4904262 - 4904179
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||| || ||||||| ||||| |||||||||| |||||||||| |||| || |||||||||||||||||||| ||||||||||    
T  4904262 tcactgcagcataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacat 4904179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 4923755 - 4923689
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactg 325  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  4923755 tcactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttactg 4923689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 37751111 - 37751029
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||||||||||| |||||||  |||||||||| | |||| ||| |||||||||||| |||||||| ||||||||    
T  37751111 tcactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacat 37751029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 53300344 - 53300411
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||| | |||||| |||||||||    
T  53300344 tgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaaca 53300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 342
Target Start/End: Complemental strand, 24559118 - 24559034
Alignment:
Q  258 gtcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||| ||||||||||| || |||||||| || |||| ||| | |||| |||||||||||||||| |||||| ||||||||||    
T  24559118 gtcactagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacat 24559034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 47066141 - 47066074
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||| | |||||| |||||||||    
T  47066141 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 47066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 26075368 - 26075290
Alignment:
Q  263 tacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||| ||||| ||||| ||||||||||||| || | ||||||||  |||||| | |||| |||||||||    
T  26075368 tacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 1685059 - 1685002
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  1685059 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 1685002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 43600269 - 43600322
Alignment:
Q  283 gtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattag 336  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||| ||||    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttag 43600322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 1152037 - 1152094
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | ||||  ||||||||||||||| ||||||    
T  1152037 tgacatttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaa 1152094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 48464049 - 48464101
Alignment:
Q  290 ttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||| ||||  || |||||||||||| |||||| ||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacat 48464101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 14997600 - 14997682
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||| |||  ||||||||||||||||| ||||||||||||||||    
T  14997600 cactacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacat 14997682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 5528736 - 5528803
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  5528736 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 5528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 6801952 - 6801870
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||  ||| || |||||||||||||||| | ||| |||| ||| |||||||||||| |||||| |||||||||    
T  6801952 tcactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaaca 6801870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 29553608 - 29553690
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||| ||||| || |||||||| ||||||||||| |  ||| |||||||||||||||| |||||| |||| |||||    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacat 29553690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 25638807 - 25638867
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  25638807 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 25638867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 28249175 - 28249115
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  28249175 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 28249115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 5000661 - 5000740
Alignment:
Q  263 tacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||| ||||||| ||| ||||||||||||| || | ||  |||| ||||||| |||||| ||||||||||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacat 5000740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 7292813 - 7292883
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||||||||||||||||| || ||||||||||||||||||| | || || | ||||||||||| ||||||    
T  7292813 cactacaacataattgacatttaataacacttgaaaattgttactgaatcatg-aaaatgttactaattaaa 7292883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 17634578 - 17634511
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||| ||||||||||| | |||| |||||||||||||||| |||||| ||| |||||    
T  17634578 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataaca 17634511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 31347327 - 31347410
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||| |||||| ||||| || |||||||| ||||||||||| |  ||| ||||||||||| |||| |||||| ||||||||||    
T  31347327 tcactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacat 31347410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 6403572 - 6403654
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||| ||| | || |||||||| |||||| |||| | ||||  ||||||||||||||| |||||| ||||||||||    
T  6403572 cactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacat 6403654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 45356210 - 45356152
Alignment:
Q  283 gtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 45356152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 19370017 - 19369960
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  19370017 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19369960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 19448441 - 19448498
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  19448441 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19448498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 19532635 - 19532578
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  19532635 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19532578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 29118650 - 29118587
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact 324  Q
    |||||||| |||||||| |||||||||||||| |||||||||  |||| |||||| |||||||||    
T  29118650 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 29118587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 25637637 - 25637704
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | ||||  ||||||| ||||||| |||||| |||| ||||    
T  25637637 tgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaaca 25637704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 5651066 - 5650984
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||| ||||||||||||  |  ||||||||||||||| | ||| |||| |||||||||||||||| ||| || |||| |||||    
T  5651066 cactgcaacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacat 5650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 18308127 - 18308209
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| ||||| ||||||    
T  18308127 cactaaaacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacat 18308209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 39368761 - 39368674
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatata 347  Q
    |||| ||||||||||||||||||||||| | |||||| ||||| |||| |||||||||||||||| |||||||||||| |||| ||||    
T  39368761 cactgcaacataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttata 39368674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 37097447 - 37097379
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||| |||||||||||||||||||| | |||| ||||||||||||||||||| ||| ||||||||||    
T  37097447 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacat 37097379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 5911786 - 5911704
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||| |||   || |||||||||||||||||| | | |||| ||||||||||||||||||||||| |||||||||    
T  5911786 tcactacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaaca 5911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 28636882 - 28636964
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||| | ||||||||||| || |||||||| | |||| |||||||||||||||| ||| || ||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacat 28636964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 897433 - 897515
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||| | || |||| ||| ||||||||||||| ||||  |||||||||||| || |||||| |||||||||    
T  897433 tcactacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaaca 897515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 17112904 - 17112962
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaat 318  Q
    ||||||||||||||||| ||||||||| | ||||||||||||| |||| ||||||||||    
T  17112904 cactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaat 17112962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 16222771 - 16222838
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||| ||||||||||| | |||| |||||||||||||||| || ||| |||||||||    
T  16222771 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaaca 16222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 51758746 - 51758813
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||| ||||||||||| | |||| |||||||||||||| | |||||| |||| ||||    
T  51758746 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 51758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 12189931 - 12190013
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||| |  ||| |||| || |||| ||| | |||| |||||||||| ||||| |||||| ||||||||||    
T  12189931 cactacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacat 12190013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 15214327 - 15214385
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaa 339  Q
    |||||||||||||||||||  | |||| |||||||||| ||||| |||||| |||||||    
T  15214327 tagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaa 15214385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 13208621 - 13208669
Alignment:
Q  290 ttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagta 338  Q
    ||||||||||| ||||||  ||||||||||||||| |||||| ||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagta 13208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 7702409 - 7702490
Alignment:
Q  261 actacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||  || |||||||||| | |||||||||||||||||    
T  7702409 actacaacataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacat 7702490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 40016591 - 40016652
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacat 40016652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 24479131 - 24479213
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||| ||||||||||| || |||||||||||||||||| ||| |||| ||||| || ||||||| |||||| ||||||||||    
T  24479131 cactataacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacat 24479213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 30266996 - 30267063
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||| | |||||| |||||||||    
T  30266996 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 30267063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 11017441 - 11017518
Alignment:
Q  265 caacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||| ||||||||||| |||||||  |||| ||||  ||||||| ||||||| |||||| ||||||||||    
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacat 11017518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 31342816 - 31342756
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  31342816 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 31342756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 44920951 - 44921017
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | |||| ||| |||||||||||| |||||| |||||||||    
T  44920951 tgacatttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaaca 44921017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 41573371 - 41573453
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    ||||||||||| |||||| || |||||||| |  |||| ||| | |||| |||||||||||||||| |||||| |||||||||    
T  41573371 tcactacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 41573453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 7718180 - 7718245
Alignment:
Q  276 acatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||| |||||| ||||||||||||| | |||| |||||||||| ||||| |||||| |||||||||    
T  7718180 acatttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 7718245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 27151343 - 27151276
Alignment:
Q  269 ataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagt 337  Q
    |||||||||||||||||| | || ||| |||||| |||| |||||||||||| ||| ||||||||||||    
T  27151343 ataattgacatctagtaataatttaaa-ttgttactaaatcaagaaaaatgtcactaattaaaattagt 27151276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 36035450 - 36035529
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagta 338  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||  ||||||| ||| ||||||    
T  36035450 tcactacaacataattgacatctagtaacacttcaaaattgttactatatcaagaaaaataatactgatcaaatttagta 36035529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 27259566 - 27259484
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||| || |||||||| ||||||| | ||| |||| |||| ||||||||||| |||||| ||||||||||    
T  27259566 cactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacat 27259484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 36034997 - 36035079
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||||||| | |||||| ||||||| || |||| ||||||||||  |||| |||||| |||||||||    
T  36034997 tcactacaacataattgacatctaatgacacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaaca 36035079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 5498456 - 5498537
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaac 340  Q
    |||||||||||||||||| || |||||||| || |||| ||| | |||| |||||||||||||||| |||||| ||||||||    
T  5498456 tcactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaac 5498537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 26707839 - 26707920
Alignment:
Q  261 actacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||| |||||||||  ||| ||||||| |||||||| |||| |||| |||||||||||||||| |||||| ||||||||||    
T  26707839 actactacataattgtaatcgagtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacat 26707920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 342
Target Start/End: Complemental strand, 9633565 - 9633481
Alignment:
Q  258 gtcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||||| || |||||||||||||||| | ||| |||| | | |||||||||||| |||||| ||||| ||||    
T  9633565 gtcactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacat 9633481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 1628054 - 1627987
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| |||||||||||||||||||| | |||| |||||||||| ||||| |||||| |||||||||    
T  1628054 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 1627987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 2943309 - 2943253
Alignment:
Q  286 acacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||| |||| |||||| |||||||||||||||| |||||| ||||||||||    
T  2943309 acacttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacat 2943253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 13845985 - 13846052
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  13845985 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 13846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 16457453 - 16457370
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||| ||||| ||  |  |||| ||||||||||| | |||| |||||||||||||||| |||||| ||||||||||    
T  16457453 tcactacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacat 16457370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 2550168 - 2550226
Alignment:
Q  283 gtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 2550226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 1654576 - 1654636
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||| ||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  1654576 tagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 1654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 7407854 - 7407794
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||| ||||| |||||| |||| ||||    
T  7407854 tagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaaca 7407794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 1613313 - 1613253
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||| ||||||| ||| | |||| |||||||||||||||| | |||| |||||||||    
T  1613313 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 1613253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 23264619 - 23264535
Alignment:
Q  260 cactacaacataattgacatctagtaacact--tgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||| ||||||||| | |  |||||||||||| |||| |||||||| ||||||| |||||| ||||||||||    
T  23264619 cactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacat 23264535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 12591826 - 12591892
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaac 340  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||| | |||||| ||||||||    
T  12591826 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaac 12591892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 23904469 - 23904391
Alignment:
Q  264 acaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||| |||||||||||||||||||||| || ||||  |||||||| |||||| | | || ||||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacat 23904391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 16734805 - 16734866
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| |||||    
T  16734805 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacat 16734866  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 29668038 - 29667954
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaa--acaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||||| |||| |||||| ||||||||||| |  |||  | ||||||||||||||| |||||| ||||||||||    
T  29668038 cactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacat 29667954  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 4591138 - 4591202
Alignment:
Q  269 ataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaat 333  Q
    |||||| |||| |||||||| ||||||||| ||| |||| ||||||||||||||| |||||||||    
T  4591138 ataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaat 4591202  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 11936867 - 11936807
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  11936867 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 11936807  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 9631273 - 9631194
Alignment:
Q  263 tacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    |||||||||||||| || |||||||||||||||| | ||| |||| |||||| || |||||| | |||| ||||||||||    
T  9631273 tacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacat 9631194  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 15690432 - 15690494
Alignment:
Q  275 gacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagt 337  Q
    ||||| |||||||| ||||||||||| | |||| |||||||||||||||| |||||| |||||    
T  15690432 gacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagt 15690494  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 14669453 - 14669396
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  14669453 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 14669396  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 6684094 - 6684154
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    ||||||||||| |||||||| | | || |||||||||||||||| |||||| |||||||||    
T  6684094 tagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaaca 6684154  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 15361715 - 15361775
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    ||||||||||| |||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  15361715 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 15361775  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 17719830 - 17719774
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaa 330  Q
    |||||| ||| |||||||||||||||| | |||| |||||||||||||||| |||||    
T  17719830 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaa 17719774  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 1942548 - 1942630
Alignment:
Q  260 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 342  Q
    ||||||||||||||| | || | |||||| |||| |||||| | |||| |||||||||| |||||||| ||| ||| ||||||    
T  1942548 cactacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacat 1942630  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 6673737 - 6673675
Alignment:
Q  262 ctacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact 324  Q
    ||||||||||||| | || |||||||| ||||||| ||| | |||| ||||||||||||||||    
T  6673737 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 6673675  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 4485687 - 4485607
Alignment:
Q  259 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaa 339  Q
    |||||||||||||||| | |||||||| || ||||||| ||  | |||| |||| |||||| |||| |||||| |||||||    
T  4485687 tcactacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaa 4485607  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 6699 - 6759
Alignment:
Q  281 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 341  Q
    ||||||||||| |||||||| | |||| |||||||||||||||| |||||| |||| ||||    
T  6699 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 6759  T

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Target: scaffold0684 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 854 - 797
Alignment:
Q  274 tgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 331  Q
    |||||| ||| |||||||||||||||| | |||| |||||||| ||||||| ||||||    
T  854 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaa 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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