View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_25 (Length: 361)
Name: NF19839_high_25
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_25 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 42370401 - 42370041
Alignment:
| Q |
1 |
gatcaaatgaaatattttatgtatggtgttgtttggccaaacatctctgttctgagtatgattttagcttgaaatagtgaaggtggaagaaaaaggagtc |
100 |
Q |
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| T |
42370401 |
gatcaaatgaaatattttatgtatggtgttgtttggccaaacatctctgttctgagtatgattttagcttgaaatagtgaaggtggaagaaagaggagtc |
42370302 |
T |
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| Q |
101 |
tctttctagattaaacagattggagctgatccacaacctcttatacttacttaaactcatctttcaaatttcaattaataaaaaagtcatagatccagag |
200 |
Q |
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| T |
42370301 |
tctttctagattaaacagattggaactgatccacaacctcttatacttacttaaacccatctttcaaatttcaattaataaaaaagtcatagatccagag |
42370202 |
T |
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| Q |
201 |
aaatcaaataatgaaactataacataaagacacaaaatttcaagaaccaatcacaaaataaagaacaaaatccttggattgaatttgggtttggatttta |
300 |
Q |
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| T |
42370201 |
aaatcaaataatgaaactataacataaagactcaaaatttcaagaaccaatcacaaaataaagaacaaaatccttggattgaatttgggtttggatttta |
42370102 |
T |
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| Q |
301 |
gattggaggaattcctttcaggggttagagagaaccacaggcccaatggaatttttgccat |
361 |
Q |
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| T |
42370101 |
gattggaggaatttctttcgggggttagagagaaccacagacccaatggaatttttgccat |
42370041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 94 - 361
Target Start/End: Complemental strand, 46759013 - 46758743
Alignment:
| Q |
94 |
aggagtctctttctagattaaacagattggag-----ctgatccacaacctcttatacttacttaaactcatctttcaaatttcaattaataaaaaagtc |
188 |
Q |
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|||||| || ||| || ||||||||||||||| ||||| || |||||||||||||||||||| | |||||||||||||||||||||||||||| || |
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| T |
46759013 |
aggagtttccttccagtttaaacagattggagttcaactgattcataacctcttatacttacttaatcccatctttcaaatttcaattaataaaaaattc |
46758914 |
T |
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| Q |
189 |
atagatccagagaaatcaaataatgaaactataacataaagacacaaaatttcaagaaccaatcacaaaataaagaacaaaatccttggattgaatttgg |
288 |
Q |
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| ||||||||||| |||||||||| |||||| |||||||||| |||||||| |||| || || ||||||||||||||||||||||| ||||||||||| |
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| T |
46758913 |
acagatccagagacatcaaataattaaacta--acataaagacccaaaattttaagacccgattgcaaaataaagaacaaaatccttgaattgaatttgg |
46758816 |
T |
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| Q |
289 |
gtttggattttagattggaggaattcctttcaggggttagagagaaccacaggcccaatggaatttttgccat |
361 |
Q |
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| T |
46758815 |
gtttggtttttagattggatgaattctttttaggggttagagagaaccatatacccaatggaaatttttccat |
46758743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 15183658 - 15183719
Alignment:
| Q |
158 |
catctttcaaatttcaattaataaaaaagtcatagatccagagaaatcaaataatgaaacta |
219 |
Q |
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| T |
15183658 |
catctttcaaatttcaattaataaaatatttacagatccagagaaatcaaataatgaaacta |
15183719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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