View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_high_27 (Length: 349)

Name: NF19839_high_27
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_high_27
NF19839_high_27
[»] chr2 (23 HSPs)
chr2 (119-332)||(3910729-3910956)
chr2 (15-111)||(1297090-1297188)
chr2 (15-107)||(9275577-9275671)
chr2 (51-111)||(12725619-12725680)
chr2 (68-111)||(11751091-11751134)
chr2 (69-111)||(20432391-20432433)
chr2 (48-111)||(29559421-29559485)
chr2 (68-111)||(22301181-22301224)
chr2 (68-111)||(27177899-27177942)
chr2 (39-108)||(9276322-9276392)
chr2 (69-111)||(23857047-23857089)
chr2 (48-111)||(29512358-29512422)
chr2 (48-111)||(29719433-29719497)
chr2 (68-111)||(9540318-9540361)
chr2 (45-111)||(15902107-15902174)
chr2 (39-111)||(1296365-1296439)
chr2 (43-111)||(11750243-11750313)
chr2 (43-104)||(18174666-18174728)
chr2 (69-111)||(36238753-36238795)
chr2 (39-111)||(15774190-15774262)
chr2 (70-111)||(24121314-24121355)
chr2 (79-111)||(19428188-19428220)
chr2 (68-104)||(26752021-26752057)
[»] chr7 (30 HSPs)
chr7 (15-109)||(46428175-46428270)
chr7 (39-111)||(37950460-37950533)
chr7 (42-111)||(3772522-3772592)
chr7 (39-111)||(27948432-27948505)
chr7 (15-105)||(25343295-25343387)
chr7 (15-111)||(25342482-25342581)
chr7 (69-111)||(16664149-16664191)
chr7 (69-111)||(17638509-17638551)
chr7 (39-111)||(30660578-30660652)
chr7 (69-111)||(37395523-37395565)
chr7 (69-111)||(45099917-45099959)
chr7 (43-111)||(30661452-30661521)
chr7 (74-111)||(33781585-33781622)
chr7 (48-111)||(45161955-45162019)
chr7 (45-111)||(3688370-3688437)
chr7 (68-111)||(38225286-38225329)
chr7 (76-111)||(47171437-47171472)
chr7 (69-111)||(3903363-3903405)
chr7 (69-111)||(13785617-13785659)
chr7 (69-111)||(14305076-14305118)
chr7 (69-111)||(19068419-19068461)
chr7 (50-111)||(24453730-24453792)
chr7 (23-111)||(18977746-18977834)
chr7 (24-111)||(37706413-37706502)
chr7 (29-100)||(40273557-40273630)
chr7 (48-111)||(7668469-7668532)
chr7 (79-111)||(9749902-9749934)
chr7 (45-96)||(14686132-14686184)
chr7 (76-108)||(15305296-15305328)
chr7 (68-111)||(46428840-46428884)
[»] chr8 (16 HSPs)
chr8 (15-111)||(38576269-38576367)
chr8 (39-111)||(8996966-8997039)
chr8 (48-111)||(41974627-41974691)
chr8 (68-111)||(27441453-27441496)
chr8 (68-111)||(27442163-27442206)
chr8 (26-100)||(31602014-31602090)
chr8 (68-111)||(9197082-9197125)
chr8 (69-111)||(3165145-3165187)
chr8 (69-111)||(3291557-3291599)
chr8 (42-111)||(31642082-31642152)
chr8 (70-111)||(39860097-39860138)
chr8 (69-105)||(14825636-14825672)
chr8 (79-111)||(14826195-14826227)
chr8 (79-111)||(28930864-28930896)
chr8 (79-111)||(32979059-32979091)
chr8 (24-111)||(37064804-37064891)
[»] chr1 (33 HSPs)
chr1 (39-111)||(49680797-49680870)
chr1 (68-111)||(36390390-36390433)
chr1 (45-111)||(11704807-11704874)
chr1 (68-111)||(12760762-12760805)
chr1 (19-96)||(168891-168969)
chr1 (22-102)||(10120778-10120860)
chr1 (69-111)||(13142691-13142733)
chr1 (69-111)||(17172686-17172728)
chr1 (69-111)||(25733204-25733246)
chr1 (48-111)||(30932797-30932862)
chr1 (48-111)||(4433849-4433913)
chr1 (48-111)||(7406231-7406295)
chr1 (45-111)||(7558434-7558502)
chr1 (79-111)||(36688402-36688434)
chr1 (45-111)||(7559198-7559265)
chr1 (19-89)||(46812160-46812231)
chr1 (69-111)||(24991956-24991998)
chr1 (69-111)||(25468496-25468538)
chr1 (69-111)||(27256736-27256778)
chr1 (43-100)||(30663355-30663413)
chr1 (69-111)||(46391890-46391932)
chr1 (48-100)||(10121554-10121607)
chr1 (48-100)||(13262830-13262883)
chr1 (69-110)||(28182096-28182137)
chr1 (43-111)||(34309227-34309296)
chr1 (48-111)||(169629-169693)
chr1 (48-111)||(4439208-4439272)
chr1 (48-111)||(8987776-8987840)
chr1 (15-59)||(11704122-11704166)
chr1 (68-111)||(17171916-17171960)
chr1 (69-109)||(19172599-19172639)
chr1 (79-111)||(26119428-26119460)
chr1 (79-111)||(31572480-31572512)
[»] chr6 (13 HSPs)
chr6 (42-111)||(26528809-26528879)
chr6 (42-111)||(10171262-10171332)
chr6 (70-111)||(25060802-25060843)
chr6 (48-111)||(19310987-19311051)
chr6 (42-111)||(10171961-10172032)
chr6 (42-111)||(12344880-12344950)
chr6 (48-111)||(19323768-19323832)
chr6 (79-111)||(21133260-21133292)
chr6 (79-111)||(25061583-25061615)
chr6 (42-111)||(26529508-26529579)
chr6 (80-111)||(33435326-33435357)
chr6 (78-111)||(18227718-18227751)
chr6 (79-111)||(4940258-4940290)
[»] chr5 (23 HSPs)
chr5 (15-111)||(235578-235676)
chr5 (15-59)||(15036915-15036959)
chr5 (15-59)||(15039412-15039456)
chr5 (15-59)||(15041909-15041953)
chr5 (15-111)||(236896-236994)
chr5 (43-111)||(17071210-17071279)
chr5 (15-55)||(15044366-15044406)
chr5 (45-111)||(7632081-7632148)
chr5 (69-111)||(237844-237886)
chr5 (69-111)||(19128756-19128798)
chr5 (69-111)||(19359690-19359732)
chr5 (69-111)||(28705902-28705944)
chr5 (43-111)||(34600247-34600316)
chr5 (45-111)||(36038681-36038748)
chr5 (69-111)||(1281822-1281864)
chr5 (69-111)||(10554508-10554550)
chr5 (71-113)||(19366591-19366633)
chr5 (69-111)||(38056780-38056822)
chr5 (81-111)||(43510975-43511005)
chr5 (48-111)||(29046014-29046079)
chr5 (76-111)||(17071824-17071860)
chr5 (71-111)||(27364512-27364552)
chr5 (69-109)||(28705153-28705193)
[»] chr4 (32 HSPs)
chr4 (39-111)||(26147025-26147098)
chr4 (45-110)||(2446160-2446226)
chr4 (15-100)||(47785768-47785854)
chr4 (69-111)||(31329741-31329783)
chr4 (43-111)||(47688476-47688546)
chr4 (69-111)||(53773610-53773652)
chr4 (43-111)||(7841531-7841600)
chr4 (43-111)||(12920271-12920340)
chr4 (43-111)||(20774177-20774246)
chr4 (70-111)||(40495082-40495123)
chr4 (76-109)||(47687898-47687931)
chr4 (79-111)||(46169014-46169046)
chr4 (68-111)||(142547-142590)
chr4 (41-111)||(52871285-52871356)
chr4 (69-111)||(53772793-53772836)
chr4 (19-96)||(5046455-5046533)
chr4 (69-111)||(8248544-8248586)
chr4 (69-111)||(8266209-8266251)
chr4 (69-111)||(12368679-12368721)
chr4 (33-94)||(16903630-16903692)
chr4 (69-111)||(16903692-16903734)
chr4 (81-111)||(43147273-43147303)
chr4 (69-111)||(53732422-53732464)
chr4 (39-111)||(11938698-11938771)
chr4 (24-100)||(32089591-32089668)
chr4 (23-95)||(56262481-56262554)
chr4 (79-111)||(1466027-1466059)
chr4 (79-111)||(3654020-3654052)
chr4 (71-111)||(5591057-5591097)
chr4 (79-111)||(24008380-24008412)
chr4 (79-111)||(44470160-44470192)
chr4 (71-111)||(48127273-48127313)
[»] scaffold0504 (1 HSPs)
scaffold0504 (52-111)||(5385-5445)
[»] scaffold0002 (1 HSPs)
scaffold0002 (33-111)||(428888-428968)
[»] chr3 (17 HSPs)
chr3 (68-111)||(13477044-13477087)
chr3 (69-111)||(48648190-48648232)
chr3 (70-111)||(6775255-6775296)
chr3 (46-110)||(14871141-14871206)
chr3 (23-111)||(37988195-37988284)
chr3 (68-111)||(20212967-20213010)
chr3 (22-111)||(54458640-54458731)
chr3 (68-110)||(8949923-8949965)
chr3 (69-111)||(21726754-21726796)
chr3 (69-111)||(21727553-21727595)
chr3 (42-111)||(48764464-48764534)
chr3 (23-95)||(48507009-48507082)
chr3 (68-105)||(52605506-52605543)
chr3 (48-111)||(264454-264517)
chr3 (48-111)||(31115601-31115665)
chr3 (48-111)||(31974638-31974702)
chr3 (78-106)||(43202830-43202858)
[»] scaffold0176 (2 HSPs)
scaffold0176 (69-111)||(26578-26620)
scaffold0176 (71-111)||(27552-27592)
[»] scaffold0086 (1 HSPs)
scaffold0086 (69-111)||(8315-8357)
[»] scaffold0418 (1 HSPs)
scaffold0418 (70-111)||(6909-6950)
[»] scaffold2007 (1 HSPs)
scaffold2007 (48-111)||(737-801)
[»] scaffold0096 (1 HSPs)
scaffold0096 (69-111)||(39882-39924)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 119 - 332
Target Start/End: Original strand, 3910729 - 3910956
Alignment:
Q  119 acgattcaaaaaagaggtactaagacgtgacttatatctgtttctctcattatctcaccataaactaaccc------actctagtgtgtctctgtttttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||     
T  3910729 acgattcaaaaaagaggtactaagacgtgacttatatctgtttctctcattatctcaccataaactaaccctaacccactctagtgtgtctctgttttt- 3910827  T
Q  213 ccttcctttatttatgc---------atttatttccacttaaattgtttgtaagtctgaagatagaaatgagcaagcttacccaaaccatcgagttaaac 303  Q
    |||||||||||||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3910828 ccttcctttatttatgcattacatgcatttatttccacttaaattgtttgtaagtatgaagatagaaatgagcaagcttacccaaaccatcgagttaaac 3910927  T
Q  304 taaactatgtgataaggagaagatgatct 332  Q
    |||||||||||||||||||||||||||||    
T  3910928 taaactatgtgataaggagaagatgatct 3910956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 1297090 - 1297188
Alignment:
Q  15 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  1297090 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 1297188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 9275671 - 9275577
Alignment:
Q  15 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatata 107  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||    
T  9275671 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatata 9275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 12725619 - 12725680
Alignment:
Q  51 gatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12725619 gatttggtgtcaacaaatccgttgacacctggtgtcaacggatcctaactcatatatatata 12725680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 11751091 - 11751134
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  11751091 tcgttgacacctggtgtcaacggatcctaactcatatatatata 11751134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 20432391 - 20432433
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  20432391 cgttgatacctggtgtcaacggatcttaactcatatatatata 20432433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 29559421 - 29559485
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | ||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  29559421 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacagatcctaactcatatatatata 29559485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 22301224 - 22301181
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  22301224 tcgttgacacctggtgtcaacggatcctgactcatatatatata 22301181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 27177942 - 27177899
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27177942 tcgttgacacctggtgtcaacggatcctatctcatatatatata 27177899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 9276322 - 9276392
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatat 108  Q
    ||||| || |||||||||||| || | ||| |||||| |||||||||||||||||||| ||||||||||||    
T  9276322 attgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcatatatat 9276392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 23857047 - 23857089
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  23857047 cgttgacaccaggtgtcaacggatcctaactcatatatatata 23857089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 29512422 - 29512358
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || ||||| |||||| ||| |||||||||||||| | |||||||||||||||    
T  29512422 tgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcatgactcatatatatata 29512358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 29719497 - 29719433
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  29719497 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcatatatatata 29719433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 9540361 - 9540318
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  9540361 tcgttgacacctggtgtcaacggatcctgtctcatatatatata 9540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 15902174 - 15902107
Alignment:
Q  45 ggatgagatttggtgccatca-aatcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||| ||  | || |||||| ||||||||||||||||||||  ||||||||||||||    
T  15902174 ggatgagatttggtgtcaatataaccgttgacacctggtgtcaacggatcctgtctcatatatatata 15902107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 1296439 - 1296365
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||| || |||||||||||| || | ||| |||||| |||||||||||||||||||| |||| |||||||||||    
T  1296439 attgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactctatatatatata 1296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 11750313 - 11750243
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||| |||||||||||| || | |||| ||||| |||||||||||| |||||||||||| |||||||||||    
T  11750313 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactctatatatatata 11750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 18174666 - 18174728
Alignment:
Q  43 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatat 104  Q
    |||| |||||||||||| || | ||| |||||| ||||| |||||||||||||||||||||||    
T  18174666 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcatat 18174728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 36238753 - 36238795
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||||| |||||| | ||||||||||||||    
T  36238753 cgttgatacctggtgtcaatggatcccatctcatatatatata 36238795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 15774262 - 15774190
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| || |||||||||||| || ||||| |||||| ||| ||||||||||||||||| || |||||||||||    
T  15774262 attgatggttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcctatct-atatatatata 15774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 24121314 - 24121355
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| ||||||| |||||||||||||||    
T  24121314 gttgacacctggtgtcaatggatcctgactcatatatatata 24121355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 19428188 - 19428220
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||| |||||||||||||||||    
T  19428188 tggtgtcaacggatcataactcatatatatata 19428220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 26752057 - 26752021
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatat 104  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  26752057 tcgttgacacctggtgtcaacggatcctgactcatat 26752021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 46428270 - 46428175
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatata 109  Q
    ||||||||||||||||||||||| || || || |||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||||||    
T  46428270 aatatgtgcctttggattaaatatatagatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatatatata 46428175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 37950460 - 37950533
Alignment:
Q  39 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  37950460 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 37950533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 3772522 - 3772592
Alignment:
Q  42 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3772522 gacggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctaactcatatatatata 3772592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 27948505 - 27948432
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  27948505 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcatatatatata 27948432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 25343387 - 25343295
Alignment:
Q  15 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatata 105  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||    
T  25343387 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatata 25343295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 25342581 - 25342482
Alignment:
Q  15 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  25342581 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 25342482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 16664149 - 16664191
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  16664149 cgttgacacctggtgtcaacggatcctaactcatatatatata 16664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 17638509 - 17638551
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17638509 cgttgacacctggtgtcaacggatcctaactcatatatatata 17638551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 30660652 - 30660578
Alignment:
Q  39 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  30660652 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 30660578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 37395523 - 37395565
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  37395523 cgttgacacctggtgtcaacggatcctaactcatatatatata 37395565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 45099917 - 45099959
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  45099917 cgttgacacctggtgtcaacggatcctgactcatatatatata 45099959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 30661452 - 30661521
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  30661452 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcatatatatata 30661521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 33781622 - 33781585
Alignment:
Q  74 atacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33781622 atacctgatgtcaacggatcctaactcatatatatata 33781585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 45162019 - 45161955
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||| | |||||||||||| |||||||||||||||||||||||    
T  45162019 tgagatttggtgtcaacgaatccgttaacacctggtgtcaatggatcctaactcatatatatata 45161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 3688437 - 3688370
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||| || | |||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  3688437 ggataagatttggtgtcaacgaatccgttgatatctggtgtcaacggatcctgtctcatatatatata 3688370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 38225329 - 38225286
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| |||||||||||||||||| | |||||||||||||||    
T  38225329 tcgttgacacctggtgtcaacggatcatgactcatatatatata 38225286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 47171437 - 47171472
Alignment:
Q  76 acctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||| |||||||||||||||    
T  47171437 acctggtgtcaacggatcctgactcatatatatata 47171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 3903363 - 3903405
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| ||| |||||||||||    
T  3903363 cgttgacacctggtgtcaacggatcctgacttatatatatata 3903405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 13785617 - 13785659
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  13785617 cgttgacacctggtgtcaacggatcctgtctcatatatatata 13785659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 14305118 - 14305076
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||| |||||||||||||||| ||||||||||||||    
T  14305118 cgttgacacctagtgtcaacggatcctatctcatatatatata 14305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 19068419 - 19068461
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  19068419 cgttgacacctggtgtcaacggatcctgtctcatatatatata 19068461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 24453730 - 24453792
Alignment:
Q  50 agatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||| || |||||| ||||| |||||||||||||| |||| | ||||||||||||||    
T  24453730 agatttggtgtcaacaaatccgttgacacctggtgtcaacgaatcccatctcatatatatata 24453792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 18977746 - 18977834
Alignment:
Q  23 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||| | ||||| || ||||||||||||  | | ||| |||||| |||||||||||| ||||||| ||| |||||||||||    
T  18977746 cctttggattaaaaaaattgatggttgagatttggtgttaacgaatccgttgacacctggtgtcaatggatcctgact-atatatatata 18977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37706502 - 37706413
Alignment:
Q  24 ctttggattaaatagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||||||||||| | ||||| || ||| ||||||||  | | |||| |||||||||||||||||| ||||||| |||| |||||||||||    
T  37706502 ctttggattaaaaaaattgatggttgaaatttggtgttaacgaatccgttgatacctggtgtcaatggatcctgactctatatatatata 37706413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 40273630 - 40273557
Alignment:
Q  29 gattaaatagattga-cggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 100  Q
    |||||| |||||||| ||| |||||||||||| || | ||| | |||| |||||||||||||||||||||||||    
T  40273630 gattaattagattgaacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctaactc 40273557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 7668532 - 7668469
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| ||| |||||||||||    
T  7668532 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgact-atatatatata 7668469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 9749934 - 9749902
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  9749934 tggtgtcaacggatcctgactcatatatatata 9749902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 14686184 - 14686132
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatccta 96  Q
    ||||||||||||||| || |||||| ||||| || ||||||||||||||||||    
T  14686184 ggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatccta 14686132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 15305328 - 15305296
Alignment:
Q  76 acctggtgtcaacggatcctaactcatatatat 108  Q
    ||||||||||||||||| |||||||||||||||    
T  15305328 acctggtgtcaacggattctaactcatatatat 15305296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 46428840 - 46428884
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||    
T  46428840 tcgttgacacctggtgtcaacggatcctgactctatatatatata 46428884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 38576269 - 38576367
Alignment:
Q  15 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38576269 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 38576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 8996966 - 8997039
Alignment:
Q  39 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| || |||||||||||| || |||||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  8996966 attgatggttgagatttggtgtcaacaaatcagttgacacctggtatcaacggatcctgactcatatatatata 8997039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 41974691 - 41974627
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  41974691 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatatatatata 41974627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 27441496 - 27441453
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27441496 tcgttgacacctggtgtcaacggatcctatctcatatatatata 27441453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 27442163 - 27442206
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  27442163 tcgttgacacctggtgtcaacggatcctgactcatatatatata 27442206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 31602090 - 31602014
Alignment:
Q  26 ttggattaaatagatt-gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 100  Q
    |||||||||||| ||| ||||| |||||||||||| || | ||| |||||| ||||||||||||| |||||||||||    
T  31602090 ttggattaaataaattagacggttgagatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcctaactc 31602014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 9197125 - 9197082
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  9197125 tcgttgacacctggtgtcaacggattctgactcatatatatata 9197082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 3165145 - 3165187
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||| |||||||||||||| |||||||||||||||    
T  3165145 cgttgacacctgatgtcaacggatcctgactcatatatatata 3165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 3291557 - 3291599
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  3291557 cgttgacatctggtgtcaacagatcctaactcatatatatata 3291599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 31642082 - 31642152
Alignment:
Q  42 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| || | ||| |||||| | |||||||||| ||||||| |||||||||||||||    
T  31642082 gacggttgagatttggtgtcaacgaattcgttgacatctggtgtcaatggatcctgactcatatatatata 31642152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 39860138 - 39860097
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| ||||||||||||||||||||  ||||||||||||||    
T  39860138 gttgacacctggtgtcaacggatcctgcctcatatatatata 39860097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 14825672 - 14825636
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatata 105  Q
    |||||| |||| |||||||||||||||||||||||||    
T  14825672 cgttgacacctagtgtcaacggatcctaactcatata 14825636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 14826195 - 14826227
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||| ||||||||||||||    
T  14826195 tggtgtcaacggatcctatctcatatatatata 14826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 28930864 - 28930896
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  28930864 tggtgtcaacggatcctgactcatatatatata 28930896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 32979091 - 32979059
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  32979091 tggtgtcaacggatcctgactcatatatatata 32979059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37064891 - 37064804
Alignment:
Q  24 ctttggattaaatagattgacggatgagatttggtgcca-tcaaatcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| ||||||| | |||||||| || ||||||||| || | || ||||||| ||||||||||||| |||||| ||| |||||||||||    
T  37064891 cttttgattaaaaaaattgacggttgtgatttggtgtcaatgaattcgttgacacctggtgtcaacagatcctgact-atatatatata 37064804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 49680870 - 49680797
Alignment:
Q  39 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  49680870 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 49680797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 36390390 - 36390433
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  36390390 tcgttgacacctggtgtcaacggatcctaactcatatatatata 36390433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 11704807 - 11704874
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||| || | |||| ||||| || ||||||||| |||||||||||||||||||||||    
T  11704807 ggatgagatttggtgtcaacgaatccgttgacacttggtgtcaatggatcctaactcatatatatata 11704874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 12760805 - 12760762
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  12760805 tcgttgacaccaggtgtcaacggatcctaactcatatatatata 12760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 168969 - 168891
Alignment:
Q  19 tgtgcctttggattaaatagattgacggatgagatttggtg-ccatcaaatcgttgatacctggtgtcaacggatccta 96  Q
    ||||||||||||||||||||||  |||| |||||||||||| | || ||  || ||| |||||||||||||||||||||    
T  168969 tgtgcctttggattaaatagataaacggttgagatttggtgtcaatgaatccgctgacacctggtgtcaacggatccta 168891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 10120860 - 10120778
Alignment:
Q  22 gcctttggattaa-atagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcat 102  Q
    ||||||||||||| ||| |||||||||   ||||||||| || | |||| ||||| |||||||||||||||||||||||||||    
T  10120860 gcctttggattaacataaattgacggaaaggatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactcat 10120778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 13142691 - 13142733
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  13142691 cgttgacacctggtgtcaagggatcctaactcatatatatata 13142733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 17172686 - 17172728
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  17172686 cgttgacacctggtgtcaacggatcctatctcatatatatata 17172728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 25733204 - 25733246
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  25733204 cgttgatacctgatgtcaacggatcttaactcatatatatata 25733246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 30932797 - 30932862
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||||||||||||| | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  30932797 tgagatttggtgccaacgaatccgttgacacctggtgtcaacggatcctcactctatatatatata 30932862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 4433849 - 4433913
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| ||||||||||||||||||||| || |||||||||||    
T  4433849 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatcttatatatatata 4433913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 7406295 - 7406231
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | ||| |||| | |||||||||||||||||||| |||||||||||||||    
T  7406295 tgagatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctgactcatatatatata 7406231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 7558502 - 7558434
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||||||||||||| || |||||| ||||| || |||||||||||||||||| ||| |||||||||||    
T  7558502 ggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatcctatctctatatatatata 7558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 36688434 - 36688402
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||||    
T  36688434 tggtgtcaacggatcctaactcatatatatata 36688402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 7559198 - 7559265
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||| || |  ||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  7559198 ggatgagatttggtgtcaacggatccgttgacacctggtgtcaacggatcctgtctcatatatatata 7559265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 46812160 - 46812231
Alignment:
Q  19 tgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacg 89  Q
    ||||||||| |||||||||||| ||||| |||||||||||| || | ||| |||||| ||||||||| ||||    
T  46812160 tgtgcctttagattaaatagatagacggttgagatttggtgtcaacgaatccgttgacacctggtgttaacg 46812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 24991998 - 24991956
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  24991998 cgttgacacctggtgtcaatggatcctatctcatatatatata 24991956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 25468538 - 25468496
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  25468538 cgttgacacctggtgtcaatggatcctgactcatatatatata 25468496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 27256736 - 27256778
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  27256736 cgttgacacctggtgtcaacggatcctgtctcatatatatata 27256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 30663413 - 30663355
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc 100  Q
    |||| |||||||||||| || | |||| |||||||||||||||||||||||||| ||||    
T  30663413 acggttgagatttggtgtcaacgaatccgttgatacctggtgtcaacggatcctgactc 30663355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 46391890 - 46391932
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  46391890 cgttgacacctggtgtcaacggatcctgtctcatatatatata 46391932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 10121554 - 10121607
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc 100  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||||||||    
T  10121554 tgagatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactc 10121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 13262883 - 13262830
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 100  Q
    |||||||||||| || | ||| |||||| |||||||||||||||||||||||||    
T  13262883 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactc 13262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 28182096 - 28182137
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatat 110  Q
    |||||| ||||||||||||| |||||| ||||||||||||||    
T  28182096 cgttgacacctggtgtcaacagatcctcactcatatatatat 28182137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 34309227 - 34309296
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||  |||| |||||||||    
T  34309227 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcacatatatata 34309296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 169629 - 169693
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| ||  |||| |||||| ||||||||||||||||||||| |||| | |||||||    
T  169629 tgagatttggtgtcaataaattcgttgacacctggtgtcaacggatcctacctcacacatatata 169693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 4439208 - 4439272
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| ||| ||||||||||||||||| || |||||||||||    
T  4439208 tgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctatcttatatatatata 4439272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 8987840 - 8987776
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| ||||| ||||||| |||||| |||||||||||||||    
T  8987840 tgagatttggtgtcaacgaatccgttgacacctgatgtcaaccgatcctgactcatatatatata 8987776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 11704166 - 11704122
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtg 59  Q
    |||||||||||||||||||||||||| || || ||| ||||||||    
T  11704166 aatatgtgcctttggattaaatagatagatggttgaaatttggtg 11704122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 17171960 - 17171916
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||    
T  17171960 tcgttgacacctggtgtcaacggatcctatctctatatatatata 17171916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 19172599 - 19172639
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatata 109  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  19172599 cgttgacacctggtgtcaatggatcctgactcatatatata 19172639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 26119428 - 26119460
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  26119428 tggtgtcaacggatcctgactcatatatatata 26119460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 31572480 - 31572512
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  31572480 tggtgtcaacggatcctgactcatatatatata 31572512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 26528879 - 26528809
Alignment:
Q  42 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26528879 gacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactcatatatatata 26528809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 10171332 - 10171262
Alignment:
Q  42 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  10171332 gacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatatatatata 10171262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 25060843 - 25060802
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  25060843 gttgacacctggtgtcaacggatcctaactcatatatatata 25060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 19311051 - 19310987
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || |||||| ||| | |||||||||||||||||||| |||||||||||||||    
T  19311051 tgagatttggtgtcaacaaatccgttaacacctggtgtcaacggatcctgactcatatatatata 19310987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 10171961 - 10172032
Alignment:
Q  42 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  10171961 gacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactctatatatatata 10172032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 12344950 - 12344880
Alignment:
Q  42 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||  || | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  12344950 gacggttgagatttggtatcaacgaatctgttgacacctggtgtcaatggatcctaactcatatatatata 12344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 19323768 - 19323832
Alignment:
Q  48 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | ||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  19323768 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgtctcatatatatata 19323832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 21133260 - 21133292
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||||    
T  21133260 tggtgtcaacggatcctaactcatatatatata 21133292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 25061583 - 25061615
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||||    
T  25061583 tggtgtcaacggatcctaactcatatatatata 25061615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 26529508 - 26529579
Alignment:
Q  42 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||| |||||||||||| || | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  26529508 gacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatata 26529579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 33435357 - 33435326
Alignment:
Q  80 ggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||||||||||||||||||    
T  33435357 ggtgtcaacggatcctaactcatatatatata 33435326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 18227751 - 18227718
Alignment:
Q  78 ctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||| |||||||||||||||    
T  18227751 ctggtgtcaacggatcctgactcatatatatata 18227718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 4940258 - 4940290
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  4940258 tggtgtcaacggatcctgactcatatatatata 4940290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 235676 - 235578
Alignment:
Q  15 aatatgtgcctttggattaaat-agattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||| |||||||| | || ||||| |||||||||||| || | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  235676 aatatgagccttttgattaaatgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactcatatatatata 235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 15036959 - 15036915
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtg 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  15036959 aatatgtgcctttggattaaatagattgagggatgagatttggtg 15036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 15039456 - 15039412
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtg 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  15039456 aatatgtgcctttggattaaatagattgagggatgagatttggtg 15039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 15041953 - 15041909
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtg 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  15041953 aatatgtgcctttggattaaatagattgagggatgagatttggtg 15041909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 236896 - 236994
Alignment:
Q  15 aatatgtgcctttggattaaat-agattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||| |||||||| | || ||||| |||||||||||| |  | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  236896 aatatgagccttttgattaaatgaaatagacggttgagatttggtgtctacgaatccgttgacacctggtgtcaatggatcctaactcatatatatata 236994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 17071279 - 17071210
Alignment:
Q  43 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | ||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  17071279 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcatatatatata 17071210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 15044406 - 15044366
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagattt 55  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  15044406 aatatgtgcctttggattaaatagattgagggatgagattt 15044366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 7632148 - 7632081
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||| || | |||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  7632148 ggataagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatctcatatatatata 7632081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 237844 - 237886
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  237844 cgttgacacctggtgtcaacggatcctgactcatatatatata 237886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 19128798 - 19128756
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  19128798 cgttgacacctggtgtcaacggatcctgactcatatatatata 19128756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 19359732 - 19359690
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  19359732 cgttgacacctggtgtcaacggatcctgactcatatatatata 19359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 28705902 - 28705944
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  28705902 cgttgacacctggtgtcaacggatcctgactcatatatatata 28705944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 34600316 - 34600247
Alignment:
Q  43 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | ||| |||||| ||||| |||||||||||||||||| |||||||||||    
T  34600316 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaacttatatatatata 34600247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 36038748 - 36038681
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||  | | |||| |||||||||||||||||||||||||   ||||||||||||||    
T  36038748 ggatgagatttggtgttaacgaatccgttgatacctggtgtcaacggatcccctctcatatatatata 36038681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 1281864 - 1281822
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  1281864 cgttgacacctggtgtcaatggatcctatctcatatatatata 1281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 10554550 - 10554508
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  10554550 cgttgacacctggtgtcaacggatcctgtctcatatatatata 10554508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 19366591 - 19366633
Alignment:
Q  71 ttgatacctggtgtcaacggatcctaactcatatatatataca 113  Q
    |||| |||||||||||||||||||||||||||| | |||||||    
T  19366591 ttgacacctggtgtcaacggatcctaactcataaaaatataca 19366633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 38056822 - 38056780
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||    
T  38056822 cgttgacacctggtgtcaacagatcctatctcatatatatata 38056780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 43510975 - 43511005
Alignment:
Q  81 gtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||    
T  43510975 gtgtcaacggatcctaactcatatatatata 43511005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 29046079 - 29046014
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  29046079 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatata 29046014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 17071824 - 17071860
Alignment:
Q  76 acctggtgtcaacggatcctaactc-atatatatata 111  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17071824 acctggtgtcaacggatcctaactctatatatatata 17071860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 27364512 - 27364552
Alignment:
Q  71 ttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  27364512 ttgacacctggtgtcaacggatcctgtctcatatatatata 27364552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28705193 - 28705153
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatata 109  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  28705193 cgttgacacctggtgtcaacggatactgactcatatatata 28705153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 26147025 - 26147098
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26147025 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcatatatatata 26147098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 2446160 - 2446226
Alignment:
Q  45 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatat 110  Q
    |||||||||||||||  | | |||| ||||| |||||||||||||||||||||||||||||||||||    
T  2446160 ggatgagatttggtgttaacgaatctgttgacacctggtgtcaacggatcctaactcatatatatat 2446226  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 47785768 - 47785854
Alignment:
Q  15 aatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 100  Q
    ||||||||||||||||||||||| || || || |||||||||||| || | ||| |||||| ||||||||||||| |||||| ||||    
T  47785768 aatatgtgcctttggattaaatatatagatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacagatcctgactc 47785854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 31329741 - 31329783
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  31329741 cgttgacacctggtgtcaacggatcctgactcatatatatata 31329783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 47688476 - 47688546
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  47688476 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 47688546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 53773610 - 53773652
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  53773610 cgttgacacctgatgtcaacggatcctaactcatatatatata 53773652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 7841600 - 7841531
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| || | |||| ||| | ||||| |||||||||||||| |||||||||||||||    
T  7841600 acggatgagatttggtgtcaacgaatccgttaacacctgatgtcaacggatcctgactcatatatatata 7841531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 12920271 - 12920340
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | |||| ||| ||||||||||||||| ||||||| ||||||||||||||    
T  12920271 acggttgagatttggtgtcaacgaatctgttaatacctggtgtcaaccgatcctatctcatatatatata 12920340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 20774177 - 20774246
Alignment:
Q  43 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||| || | |||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  20774177 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcatatatatata 20774246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 40495123 - 40495082
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  40495123 gttgacacctggtgtcaacggatcctgactcatatatatata 40495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 47687931 - 47687898
Alignment:
Q  76 acctggtgtcaacggatcctaactcatatatata 109  Q
    ||||||||||||||||||||||||||||||||||    
T  47687931 acctggtgtcaacggatcctaactcatatatata 47687898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 46169014 - 46169046
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||||    
T  46169014 tggtgtcaacggatcctaactcatatatatata 46169046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 142547 - 142590
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  142547 tcgttgacacccggtgtcaacggatcctatctcatatatatata 142590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 52871356 - 52871285
Alignment:
Q  41 tgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||| ||||||||| || | |||| ||||| |||||||||||||||||| |||||||| ||| ||||    
T  52871356 tgacggatgtgatttggtgtcaacgaatccgttgacacctggtgtcaacggatcttaactcatttatctata 52871285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 53772836 - 53772793
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  53772836 cgttgacacctggtgtcaacggatcctaactctatatatatata 53772793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 5046455 - 5046533
Alignment:
Q  19 tgtgcctttggattaaatagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatccta 96  Q
    |||||| || |||||| || || || |||| |||||||||| || | |||| |||||||||||||||||||||||||||    
T  5046455 tgtgccattagattaattaaatagatggattagatttggtgtcaacgaatctgttgatacctggtgtcaacggatccta 5046533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 8248544 - 8248586
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  8248544 cgttgacatctggtgtcaacggatcctgactcatatatatata 8248586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 8266209 - 8266251
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  8266209 cgttgacatctggtgtcaacggatcctgactcatatatatata 8266251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 12368679 - 12368721
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  12368679 cgttgacacctagtgtcaacggatcctgactcatatatatata 12368721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 16903630 - 16903692
Alignment:
Q  33 aaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcc 94  Q
    |||||||||||||| |||||||||||| || | ||| |||||| |||||||||||||| ||||    
T  16903630 aaatagattgacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 16903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 16903692 - 16903734
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||| ||||| |||||||||||||||    
T  16903692 cgttgacacctggtgtcaacgaatcctgactcatatatatata 16903734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 43147273 - 43147303
Alignment:
Q  81 gtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||||||||||||||||    
T  43147273 gtgtcaacggatcctaactcatatatatata 43147303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 53732464 - 53732422
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  53732464 cgttgacacctggtgtcaacggatcctgtctcatatatatata 53732422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 11938771 - 11938698
Alignment:
Q  39 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||| ||| ||||||||| ||||||||||||    
T  11938771 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtgaacagatcctaacacatatatatata 11938698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 32089591 - 32089668
Alignment:
Q  24 ctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 100  Q
    |||||||||||| | || |||||||| ||||||||  || | ||| |||||| | |||||||||||||||||||||||    
T  32089591 ctttggattaaaaaaatagacggatgtgatttggtatcaacgaattcgttgacatctggtgtcaacggatcctaactc 32089668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 56262554 - 56262481
Alignment:
Q  23 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcct 95  Q
    ||||||||||||| | || ||||| |||||||||||| || | ||| | |||| ||||||||||||||||||||    
T  56262554 cctttggattaaaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcct 56262481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 1466027 - 1466059
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  1466027 tggtgtcaacggatcctgactcatatatatata 1466059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 3654052 - 3654020
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||||||||| ||||||||||||||    
T  3654052 tggtgtcaacggatcctatctcatatatatata 3654020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 5591057 - 5591097
Alignment:
Q  71 ttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  5591057 ttgacacctggtgtcaacggatcttgactcatatatatata 5591097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 24008412 - 24008380
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  24008412 tggtgtcaacggatcctgactcatatatatata 24008380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 44470160 - 44470192
Alignment:
Q  79 tggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||||||| |||||||||||||||    
T  44470160 tggtgtcaacggatcctgactcatatatatata 44470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 48127313 - 48127273
Alignment:
Q  71 ttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  48127313 ttgacacctggtgtcaacggatcttgactcatatatatata 48127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 5385 - 5445
Alignment:
Q  52 atttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||| || |||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  5385 atttggtgtcaacaaatccgttgacacctggtgtcaacggatcctgactcatatatatata 5445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 428888 - 428968
Alignment:
Q  33 aaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 111  Q
    |||||||||| ||| |||||||||||| || | ||| |||||||||| |||||||||||||||| |||| |||||||||||    
T  428888 aaatagattggcggttgagatttggtgtcaacgaattcgttgataccgggtgtcaacggatcctgactctatatatatata 428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 13477087 - 13477044
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  13477087 tcgttgacacctggtgtcaacggatcctgactcatatatatata 13477044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 48648232 - 48648190
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  48648232 cgttgacacctggtgtcaacggatcctgactcatatatatata 48648190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 6775296 - 6775255
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  6775296 gttgatatttggtgtcaacggatcctaactcatatatatata 6775255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 14871206 - 14871141
Alignment:
Q  46 gatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatat 110  Q
    |||||||||||||| || | ||| |||||| |||||||||||||||||||| |||| |||||||||    
T  14871206 gatgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcttatatatat 14871141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 37988195 - 37988284
Alignment:
Q  23 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| ||||||| | ||| | || |||||||||||| || | ||| |||||| |||||||||||| ||||||| |||||||||||||||    
T  37988195 cctttagattaaaaatattaatggctgagatttggtgtcaacgaattcgttgacacctggtgtcaatggatcctgactcatatatatata 37988284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 20213010 - 20212967
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  20213010 tcgttgacacctggtgtcaacggattctgactcatatatatata 20212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 54458640 - 54458731
Alignment:
Q  22 gcctttggattaa-atagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||||||||||| ||| || ||||||   ||||||||| || | |||| ||||| ||| |||||||||||||||||| |||||||||||||    
T  54458640 gcctttggattaacataaatggacggaaaggatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcctaattcatatatatata 54458731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 8949965 - 8949923
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatatatatat 110  Q
    ||||||| || ||||||||||||||||||||| ||||||||||    
T  8949965 tcgttgacacatggtgtcaacggatcctaacttatatatatat 8949923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 21726796 - 21726754
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  21726796 cgttgacacctggtgtcaacggatcctgtctcatatatatata 21726754  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 21727553 - 21727595
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  21727553 cgttgacacctggtgtcaacggatcctgtctcatatatatata 21727595  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 48764534 - 48764464
Alignment:
Q  42 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||| || | ||| |||||| ||||| |||||| ||||||| |||||||||||||||    
T  48764534 gacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatcctgactcatatatatata 48764464  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 48507009 - 48507082
Alignment:
Q  23 cctttggattaaatagattgacggatgagatttggtgccatc-aaatcgttgatacctggtgtcaacggatcct 95  Q
    ||||||||||||| | || ||||| |||||||||||| || | || || |||| ||||||||||||||||||||    
T  48507009 cctttggattaaaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcct 48507082  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 52605506 - 52605543
Alignment:
Q  68 tcgttgatacctggtgtcaacggatcctaactcatata 105  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  52605506 tcgttgacacctggtgtcaacggatcctgactcatata 52605543  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 264517 - 264454
Alignment:
Q  48 tgagatttggtgccatcaaatcg-ttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || ||||||  |||| |||||||||||| ||||||||||| |||||||||||    
T  264517 tgagatttggtgtcaacaaatccattgacacctggtgtcaatggatcctaact-atatatatata 264454  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 31115601 - 31115665
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| |||| ||||||||||||||  |||||||||||||||    
T  31115601 tgagatttggtgtcaacgaatctgttgacacctagtgtcaacggatcccgactcatatatatata 31115665  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 31974702 - 31974638
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| || |||||||||||||||||| || |||||||||||    
T  31974702 tgagatttggtgtcaacgaatccgttgacacttggtgtcaacggatcctatcttatatatatata 31974638  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 43202830 - 43202858
Alignment:
Q  78 ctggtgtcaacggatcctaactcatatat 106  Q
    |||||||||||||||||||||||||||||    
T  43202830 ctggtgtcaacggatcctaactcatatat 43202858  T

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Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 26620 - 26578
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  26620 cgttgacacctggtgtcaacggatcctgactcatatatatata 26578  T

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Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 27552 - 27592
Alignment:
Q  71 ttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  27552 ttgacacctggtgtcaacggatcctgtctcatatatatata 27592  T

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Target: scaffold0086 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 8315 - 8357
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  8315 cgttgacacctggtgtcaatggatcctaactcatatatatata 8357  T

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Target: scaffold0418 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 6909 - 6950
Alignment:
Q  70 gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  6909 gttgacacctggtgtcaacggatcctgactcatatatatata 6950  T

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Target: scaffold2007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 801 - 737
Alignment:
Q  48 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||||||||| || | |||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  801 tgagatttggtgtcaacgaatccgttgaaacctggtgtcaatggatcctgactcatatatatata 737  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 39924 - 39882
Alignment:
Q  69 cgttgatacctggtgtcaacggatcctaactcatatatatata 111  Q
    |||||| ||||||||||||||||| || |||||||||||||||    
T  39924 cgttgacacctggtgtcaacggattctgactcatatatatata 39882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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