View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_28 (Length: 341)
Name: NF19839_high_28
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_28 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 12456 - 12113
Alignment:
| Q |
1 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgt---gttcatactaaggattttggattgcttgtgacaaaagttatgtaacttca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12456 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgtaaggttcatactaaggattttggattgcttctgacaaaagttatgtaacttca |
12357 |
T |
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| Q |
98 |
attaaatttctaatgtgtttaagcattaaaggcgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
197 |
Q |
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| T |
12356 |
attaaatttctaatgtgtttaagcattaaaggcgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
12257 |
T |
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| Q |
198 |
gttatgaattgaaacaataaataaaaaagtgttgtaaattttttctatgaacttataaagaataatgataactcttaataaaagatcctaaattcaaatg |
297 |
Q |
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| T |
12256 |
gttatgaattgaaccaataaataaaaaagtgttgtaaattttttctatgaacttataaagaataatgataactcttaataaaagatcctaaattcaaatg |
12157 |
T |
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| Q |
298 |
cagctttggaaatacaatcatattaagaataattaattgagatt |
341 |
Q |
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| T |
12156 |
cagctttggaaatacaatcatattaagaataattaattgagatt |
12113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 20193 - 19850
Alignment:
| Q |
1 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgt---gttcatactaaggattttggattgcttgtgacaaaagttatgtaacttca |
97 |
Q |
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| T |
20193 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgtaaggttcatactaaggattttggattgcttctgacaaaagttatgtaacttca |
20094 |
T |
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| Q |
98 |
attaaatttctaatgtgtttaagcattaaaggcgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
197 |
Q |
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| T |
20093 |
attaaatttctaatgtgtttaagcattaaaggcgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
19994 |
T |
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| Q |
198 |
gttatgaattgaaacaataaataaaaaagtgttgtaaattttttctatgaacttataaagaataatgataactcttaataaaagatcctaaattcaaatg |
297 |
Q |
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| T |
19993 |
gttatgaattgaaccaataaataaaaaagtgttgtaaattttttctatgaacttataaagaataatgataactcttaataaaagatcctaaattcaaatg |
19894 |
T |
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| Q |
298 |
cagctttggaaatacaatcatattaagaataattaattgagatt |
341 |
Q |
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| T |
19893 |
cagctttggaaatacaatcatattaagaataattaattgagatt |
19850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 29318 - 29098
Alignment:
| Q |
1 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgt---gttcatactaaggattttggattgcttgtgacaaaagttatgtaacttca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29318 |
atgatcaaatgcacattatataatatgttatttggcaagttaaatgtaaggttcatactaaggattttggattaattgtgacaaaagttatgtaacttca |
29219 |
T |
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| Q |
98 |
attaaatttctaatgtgtttaagcattaaaggcgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
197 |
Q |
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| T |
29218 |
attaaatttctaatgtgtttaagctttggaggtgcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccct |
29119 |
T |
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| Q |
198 |
gttatgaattgaaacaataaa |
218 |
Q |
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| T |
29118 |
gttataaattgaaacaataaa |
29098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 36575509 - 36575422
Alignment:
| Q |
131 |
gcttactttgtagcgatgatattgatcaacagaaacttctcctgtgccattatttgcgacaatccctgttatgaattgaaacaataaa |
218 |
Q |
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| T |
36575509 |
gcttactttattgcgatgatattgatcaacataaacttctcctgtgccattatttgtgacaatacctgttaccaattgaaacaataaa |
36575422 |
T |
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