View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_30 (Length: 327)
Name: NF19839_high_30
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 30790368 - 30790069
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatggaatgatgagtctaaattaattgtcattagctctgaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30790368 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatggaatgatgagtctaaattaattgtcattagctctgaat |
30790269 |
T |
|
| Q |
112 |
attcttcagcagtgtactcaatggttggctttctaaagtttgatcccacgttatttacctaaaagcataaattcatgaaaatatgtatgattcacggcaa |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30790268 |
attcttcagcagtgtactcaatggttggttttctaaagtttgatcccacgttatttacctaaaagcataaattcatgaaaatatgtatgattcacggcaa |
30790169 |
T |
|
| Q |
212 |
agtgattcattaatttgtggtgtaaaattatatcatcacataagcagcatttgcagattgcacacattgttgaattaaatccgactttaaacaatgtata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30790168 |
agtgattcattaatttgtggtgtaaaattatatcatcacataagcagcatttgcagattgcacacattgttgaattaaatccgactttaaacaatgtata |
30790069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 30798725 - 30798566
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatggaatgatgagtctaaattaattgtcattagctctgaat |
111 |
Q |
| |
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||||| |||||||| || ||||| || | |||||||||||||||| |||||| |||| ||| ||| || ||||||||||||| ||| | ||||||| |
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| T |
30798725 |
atgaatacaatgcttcccattccatatgcctttagaagaggatgtgtaagttgacacaaatgatatgcagaatctaaattaattgccataatttctgaat |
30798626 |
T |
|
| Q |
112 |
attcttcagcagtgtactcaatggttggctttctaaagtttgatcccacgttatttacct |
171 |
Q |
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|| ||||||||||||||||||||||||| || |||||||||| ||| || ||||| |||| |
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| T |
30798625 |
atacttcagcagtgtactcaatggttggtttcctaaagtttgctccaacattattcacct |
30798566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 30868443 - 30868582
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatggaatgatgagtctaaattaattgtcattagctctgaat |
111 |
Q |
| |
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||||| |||||||| || |||||||| ||||||||||||| || ||||||||||| ||| ||| || |||||||||||| ||| | | ||||| |
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| T |
30868443 |
atgaatacaatgcttcccattccagatgtctttagaagaggat-tgtaagttggcacaaatgatatgcagattctaaattaattcccataatttatgaat |
30868541 |
T |
|
| Q |
112 |
attcttcagcagtgtactcaatggttggctttctaaagttt |
152 |
Q |
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|| ||||||||||||||||||||||||| || ||||||||| |
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| T |
30868542 |
atacttcagcagtgtactcaatggttggtttcctaaagttt |
30868582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 30706215 - 30706257
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggat |
54 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
30706215 |
atgaacacaatgcttccatttccagattctttaagaagaggat |
30706257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30699381 - 30699442
Alignment:
| Q |
13 |
tgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg |
74 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||||| || |||||||| |||||| |
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| T |
30699381 |
tgaatacaatgcttccatttccagattctttaagaagaggatatgtcagttggcatagatgg |
30699442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 30719198 - 30719259
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatg |
73 |
Q |
| |
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||||| |||||||| ||||||||||||||||| |||||||||| || |||||||| ||||| |
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| T |
30719198 |
atgaaaacaatgcttccatttccagattctttaagaagaggatatgtcagttggcatagatg |
30719259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 23026565 - 23026504
Alignment:
| Q |
13 |
tgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg |
74 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||| |||| |
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|
| T |
23026565 |
tgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg |
23026504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 23035369 - 23035308
Alignment:
| Q |
13 |
tgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg |
74 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||| |||| |
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| T |
23035369 |
tgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg |
23035308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 23081156 - 23081099
Alignment:
| Q |
12 |
atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcaca |
69 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||| |||| |||||| |||| |
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| T |
23081156 |
atgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacaca |
23081099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 23092045 - 23091992
Alignment:
| Q |
21 |
atgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg |
74 |
Q |
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||||| |||| |||||||| ||||||||||||||||| |||||| |||| |||| |
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|
| T |
23092045 |
atgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg |
23091992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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