View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_32 (Length: 316)
Name: NF19839_high_32
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 31895868 - 31895784
Alignment:
| Q |
224 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcattccacattcatctcact |
308 |
Q |
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| T |
31895868 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcatttcacattcatctcact |
31895784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31896023 - 31895972
Alignment:
| Q |
8 |
tttaacgaaacgcaagaataatctttcaccattagatttatctccgaccaca |
59 |
Q |
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| T |
31896023 |
tttaacgaaacgcaagaataatctttcatcattagatttatctccaaccaca |
31895972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7252322 - 7252380
Alignment:
| Q |
1 |
atcatgttttaacgaaacgcaagaataatctttcaccattagatttatctccgaccaca |
59 |
Q |
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|||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
7252322 |
atcatggtttaacgaaacgcaagaataattcttcattattagatttatctccgaccaca |
7252380 |
T |
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