View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_35 (Length: 294)
Name: NF19839_high_35
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 5003732 - 5004008
Alignment:
| Q |
18 |
ccactaaataaatagttaaaaagttttacattaagataaattatacgagattgcttactcaagtatcatttgattattctctttgatcattcatatttat |
117 |
Q |
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| T |
5003732 |
ccactaaataaatagttaaaaagttttacattaagataaattatacgagattgcttactcaagtatcatttgattactctctttgatcattcatatttat |
5003831 |
T |
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| Q |
118 |
aagcaacttttcctaaattatattccaaatacattagtaatttaatgaatcaaacaaataaaacattccttataaatgtgactgcacgaagtacgtatgt |
217 |
Q |
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| T |
5003832 |
aaacaacttttcttaaattatattccaaatacattagttatttaataaatcaaataaataaaacattccttataaatgtgactgcacgaagtacgtatat |
5003931 |
T |
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| Q |
218 |
agagccgtggttaaacaatctcacattagaattatacatatctcttggaaatgttgattttgtctaagaaaactgat |
294 |
Q |
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| T |
5003932 |
agagccgtggttaaacaatctcacattagaattatacatatctcttggaaatgttgattttgtctaagaaaactgat |
5004008 |
T |
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