View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_high_36 (Length: 271)

Name: NF19839_high_36
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_high_36
NF19839_high_36
[»] chr5 (3 HSPs)
chr5 (19-186)||(18301322-18301489)
chr5 (45-169)||(32000045-32000169)
chr5 (75-186)||(34207599-34207710)
[»] chr4 (2 HSPs)
chr4 (25-170)||(31831704-31831849)
chr4 (121-161)||(51423738-51423778)
[»] chr3 (5 HSPs)
chr3 (25-184)||(11591554-11591713)
chr3 (67-184)||(42966129-42966246)
chr3 (67-184)||(42974560-42974677)
chr3 (30-172)||(27477356-27477498)
chr3 (27-172)||(27488581-27488726)
[»] chr6 (1 HSPs)
chr6 (108-185)||(3814707-3814784)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18301489 - 18301322
Alignment:
Q  19 ctattttggtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18301489 ctattttggtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgc 18301390  T
Q  119 tcaacctgtttttcttaaaattgctcaatacaaagctggaattgttcctgtttcttacagaaggtaac 186  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18301389 tcaacctgtttttcttagaattgctcaatacaaagctggaattgttcctgtttcttacagaaggtaac 18301322  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 32000169 - 32000045
Alignment:
Q  45 tgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgtttttcttaaaattgctc 144  Q
    ||||| |||||  |||| ||||| || |||||||| || |||||||| |||||  |||||||||||||| | ||  |||||| ||| ||| |||||||||    
T  32000169 tgtccaccaaattctgctttgccaaacaacaatggtggttggtgtaatcctcccctacaacactttgatatggcagaacctgctttccttcaaattgctc 32000070  T
Q  145 aatacaaagctggaattgttcctgt 169  Q
    |||| |||||||||||||| |||||    
T  32000069 aatataaagctggaattgtgcctgt 32000045  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 34207710 - 34207599
Alignment:
Q  75 aatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgtttttcttaaaattgctcaatacaaagctggaattgttcctgtttctt 174  Q
    |||||||| ||||||||||||||   || ||||||||||||||||   ||| | || || ||||||||||||||    ||||| ||||||||||||||||    
T  34207710 aatggaggttggtgtaaccctccacgaccacactttgatcttgctatgcctatgttcctcaaaattgctcaatatcgtgctggtattgttcctgtttctt 34207611  T
Q  175 acagaaggtaac 186  Q
    || | |||||||    
T  34207610 accgcaggtaac 34207599  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 31831849 - 31831704
Alignment:
Q  25 tggtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacc 124  Q
    |||||||||| || ||||||||||| ||||||| |||||| || || ||  |||| || ||||||||||||||| | ||||| |||||||||||||||||    
T  31831849 tggtcactgccaccaatttctgtccaccaaacaatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacattttgatcttgctcaacc 31831750  T
Q  125 tgtttttcttaaaattgctcaatacaaagctggaattgttcctgtt 170  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||    
T  31831749 tgtgtttcttcgaattgctcaatacaaagctggaattgttcctgtt 31831704  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 51423778 - 51423738
Alignment:
Q  121 aacctgtttttcttaaaattgctcaatacaaagctggaatt 161  Q
    |||||| || ||||||||||||| |||||||||||||||||    
T  51423778 aacctgcttatcttaaaattgctgaatacaaagctggaatt 51423738  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 11591554 - 11591713
Alignment:
Q  25 tggtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacc 124  Q
    |||||||||| || ||||| ||||||||||||| |||  | || |||||    || || ||||||||||||||| | || || ||||||||  |||||||    
T  11591554 tggtcactgcaacaaatttttgtcctccaaacaatgcacttccaaataatgcaggtggttggtgtaaccctcctcttcatcattttgatctctctcaacc 11591653  T
Q  125 tgtttttcttaaaattgctcaatacaaagctggaattgttcctgtttcttacagaaggta 184  Q
    ||||||||   |||||||||||||||||||||||||||| |||||| |||| | ||||||    
T  11591654 tgtttttcaacaaattgctcaatacaaagctggaattgtacctgttgcttataaaaggta 11591713  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 42966129 - 42966246
Alignment:
Q  67 ctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgtttttctta-aaattgctcaatacaaagctggaattgttc 165  Q
    |||||| |||||| |||||||| ||||||||  | || ||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||||||||||    
T  42966129 ctaataccaatggtggatggtgcaaccctccccttcagcactttgatcttgctgagcctgcttt-cttacaaattgctcaatacaaagctggaattgttc 42966227  T
Q  166 ctgtttcttacagaaggta 184  Q
    || |||| | |||||||||    
T  42966228 ctatttccttcagaaggta 42966246  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 42974560 - 42974677
Alignment:
Q  67 ctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgtttttctta-aaattgctcaatacaaagctggaattgttc 165  Q
    |||||| |||||| |||||||| ||||||||  | || ||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||||||||||    
T  42974560 ctaataccaatggtggatggtgcaaccctccccttcagcactttgatcttgctgagcctgcttt-cttacaaattgctcaatacaaagctggaattgttc 42974658  T
Q  166 ctgtttcttacagaaggta 184  Q
    || |||| | |||||||||    
T  42974659 ctatttccttcagaaggta 42974677  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 27477498 - 27477356
Alignment:
Q  30 actgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgttt 129  Q
    |||||||| ||||| ||||| |||||  |  | |||||||| |||||||| || ||||||||||||||||| ||||| |||||| | ||| ||||||  |    
T  27477498 actgctacaaatttttgtccaccaaatccatctttgcctaacaacaatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcct 27477399  T
Q  130 ttcttaaaattgctcaatacaaagctggaattgttcctgtttc 172  Q
      ||| |||||||| |||| | |||||||||||| ||||||||    
T  27477398 accttcaaattgctgaatatagagctggaattgtgcctgtttc 27477356  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 27488726 - 27488581
Alignment:
Q  27 gtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctg 126  Q
    ||||||||||| ||||| ||||| |||||  |  | |||||||| |||||||| || |||||||| |||||||| ||||| |||||| | ||| | ||||    
T  27488726 gtcactgctacaaatttttgtccaccaaatccatctttgcctaacaacaatggtggttggtgtaatcctcctttgcaacattttgatatggctgagcctg 27488627  T
Q  127 tttttcttaaaattgctcaatacaaagctggaattgttcctgtttc 172  Q
      |  ||| |||||||| |||| | |||||||||||| ||||||||    
T  27488626 cctaccttcaaattgctgaatatagagctggaattgtgcctgtttc 27488581  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 3814784 - 3814707
Alignment:
Q  108 tttgatcttgctcaacctgtttttcttaaaattgctcaatacaaagctggaattgttcctgtttcttacagaaggtaa 185  Q
    ||||||||  ||||||||||||| |   | ||||||||||| |||||||| ||||||||||||  ||| |||||||||    
T  3814784 tttgatctctctcaacctgttttccaacacattgctcaatataaagctggtattgttcctgttgtttatagaaggtaa 3814707  T

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