View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_40 (Length: 256)
Name: NF19839_high_40
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_40 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 4183443 - 4183195
Alignment:
| Q |
8 |
ccaagaatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcnnnnnnnc |
107 |
Q |
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| T |
4183443 |
ccaaaaatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcaaaaaaac |
4183344 |
T |
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| Q |
108 |
agagaaattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaaggaccgggaatatttttgagtg |
207 |
Q |
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| T |
4183343 |
agagaaattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaaggaccgggaatatttttgagtg |
4183244 |
T |
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| Q |
208 |
actcgcttcattggttgccatatgatggtcgtagtggtagttctagaaa |
256 |
Q |
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| T |
4183243 |
actcgcttcattggttgccatatgatggtcgtagtggtagttctggaaa |
4183195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 4744284 - 4744039
Alignment:
| Q |
8 |
ccaagaatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcnnnnnnnc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
4744284 |
ccaaaaatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattat---caaaaaaac |
4744188 |
T |
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| Q |
108 |
agagaaattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaaggaccgggaatatttttgagtg |
207 |
Q |
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| T |
4744187 |
agagaaattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcatcacctcattcaaggacctggaatatttttgagtg |
4744088 |
T |
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| Q |
208 |
actcgcttcattggttgccatatgatggtcgtagtggtagttctagaaa |
256 |
Q |
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| T |
4744087 |
actcgcttcattggttgccatatgatggtcgtagtggtagttctggaaa |
4744039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 51757079 - 51756985
Alignment:
| Q |
115 |
ttaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaaggaccgggaatatttttgagtgac |
209 |
Q |
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|||| |||||||||||||||||||||||||||| | |||| || || |||||||||| | ||| | ||| | |||| ||||||||| |||||||| |
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| T |
51757079 |
ttaacgttcatactttgggtaccgattattggagaaggatccaggacttcccaaatcattaccccgttccaagacctggaatatttgtgagtgac |
51756985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 51829379 - 51829429
Alignment:
| Q |
30 |
tttaccttagtctatgatcgtttcacttctaattataagattatcgctctt |
80 |
Q |
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| T |
51829379 |
tttaccttagtgtatgatcgtttcactcataattataagattattgctctt |
51829429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 51221533 - 51221501
Alignment:
| Q |
115 |
ttaatgttcatactttgggtaccgattattgga |
147 |
Q |
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| T |
51221533 |
ttaatgttcatactttgggtaccgattattgga |
51221501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 51858231 - 51858287
Alignment:
| Q |
15 |
tatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagatt |
71 |
Q |
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||||||||| ||||||| |||||||| ||||||||||||||| ||| ||||||||| |
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| T |
51858231 |
tatttacaatcctcattcaccttagtttatgatcgtttcactaataactataagatt |
51858287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 51858325 - 51858357
Alignment:
| Q |
115 |
ttaatgttcatactttgggtaccgattattgga |
147 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51858325 |
ttaatgttcatactttgggtaccgattattgga |
51858357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 51757158 - 51757105
Alignment:
| Q |
30 |
tttaccttagtctatgatcgtttcacttctaattataagattatcgctctttct |
83 |
Q |
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|||||||||||||| |||||||||||| |||||| |||||||| ||| ||||| |
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| T |
51757158 |
tttaccttagtctacgatcgtttcactaataattacaagattattgctatttct |
51757105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 51763266 - 51763230
Alignment:
| Q |
110 |
agaaattaatgttcatactttgggtaccgattattgga |
147 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
51763266 |
agaaattaatgttc-tactttgggtaccgattattgga |
51763230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 51854663 - 51854700
Alignment:
| Q |
110 |
agaaattaatgttcatactttgggtaccgattattgga |
147 |
Q |
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|||| |||||| |||||||||||||||||||||||||| |
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| T |
51854663 |
agaagttaatgctcatactttgggtaccgattattgga |
51854700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 43997276 - 43997316
Alignment:
| Q |
107 |
cagagaaattaatgttcatactttgggtaccgattattgga |
147 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| |
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| T |
43997276 |
cagagaagttaatgttcatactttgggtactaattattgga |
43997316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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