View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_high_41 (Length: 254)
Name: NF19839_high_41
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_high_41 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 35448967 - 35449205
Alignment:
| Q |
16 |
agaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaa |
115 |
Q |
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| T |
35448967 |
agaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaa |
35449066 |
T |
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| Q |
116 |
tctccatgagcagacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctcca |
215 |
Q |
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| T |
35449067 |
tctccatgagcagacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctcca |
35449166 |
T |
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| Q |
216 |
ggacattttcatcagtaccaaacatgcgagtagaagaac |
254 |
Q |
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| T |
35449167 |
ggacattttcatcaataccaaacatgcgagtagaagaac |
35449205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 35448744 - 35448974
Alignment:
| Q |
21 |
aacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctcc |
120 |
Q |
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| T |
35448744 |
aacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctcc |
35448843 |
T |
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| Q |
121 |
atgagcagacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggaca |
220 |
Q |
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| T |
35448844 |
gtgagcagacatctcaaccatatgaaatgatgatcc---accattactatagattggcatagctgatgcattcctgacaattgggcaggtctccatgaca |
35448940 |
T |
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| Q |
221 |
ttttcatcagtaccaaacatgcgagtagaagaac |
254 |
Q |
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| T |
35448941 |
ttttcatcaacaccaaacatgctaggagaagaac |
35448974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 35449198 - 35449339
Alignment:
| Q |
16 |
agaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaa |
115 |
Q |
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| T |
35449198 |
agaagaacttggatattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaa |
35449297 |
T |
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| Q |
116 |
tctccatgagcagacatatcaaccatacgaaatggtgatcca |
157 |
Q |
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| T |
35449298 |
tctccttgagcagacacgtcaaccataccaaacgatgatcca |
35449339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 35440974 - 35441087
Alignment:
| Q |
43 |
tatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccata |
142 |
Q |
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| T |
35440974 |
tatggtcattcccccattaactccttgttgcatacccatgtttgagttctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccata |
35441073 |
T |
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| Q |
143 |
cgaaatggtgatcc |
156 |
Q |
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| T |
35441074 |
ccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 35454520 - 35454565
Alignment:
| Q |
104 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
149 |
Q |
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| T |
35454520 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
35454565 |
T |
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