View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_high_46 (Length: 237)

Name: NF19839_high_46
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_high_46
NF19839_high_46
[»] chr1 (14 HSPs)
chr1 (1-222)||(13010945-13011166)
chr1 (66-221)||(13067502-13067653)
chr1 (90-221)||(13007901-13008032)
chr1 (64-210)||(30367427-30367573)
chr1 (85-216)||(14708147-14708278)
chr1 (64-221)||(13205172-13205329)
chr1 (90-221)||(13069536-13069667)
chr1 (121-221)||(13101701-13101801)
chr1 (82-221)||(13162234-13162373)
chr1 (82-221)||(13095112-13095251)
chr1 (95-221)||(13005641-13005767)
chr1 (82-219)||(13130543-13130680)
chr1 (155-216)||(13272322-13272383)
chr1 (153-198)||(13080288-13080333)
[»] chr6 (1 HSPs)
chr6 (82-210)||(31376225-31376354)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13011166 - 13010945
Alignment:
Q  1 cctatacaacccttaagcaactcatgttcacagttaagtcctcttcagatagctggaccccctccatttattgatattgtgtctgaagcaggttctcagg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13011166 cctatacaacccttaagcaactcatgttcccagttaagtcctcttcagatagctggaccccctccatttattgatattgtgtctgaagcaggttctcagg 13011067  T
Q  101 tggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaaacaagtttagtgagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13011066 tggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttccaaacaagtttagtgagct 13010967  T
Q  201 tagagaaattgcttataaaaat 222  Q
    ||||||||||||||||||||||    
T  13010966 tagagaaattgcttataaaaat 13010945  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 13067502 - 13067653
Alignment:
Q  66 atttattgatattgtgtctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggattt 165  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |    |||||||||||| || |||||||||||    
T  13067502 atttattgatgatgtgtctgaagcaggttctcaggtggacttgcaagatgccttgagtaggttcactat----agcctctgcaccattatatttggattt 13067597  T
Q  166 gatcctaattgccttcaaaacaagtttagtgagcttagagaaattgcttataaaaa 221  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  13067598 gatcctaattgccttccaaataagtttaatgagcttagagaaattgcgtataaaaa 13067653  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 13008032 - 13007901
Alignment:
Q  90 aggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaaacaag 189  Q
    |||| ||||||||||| || | ||| ||||||||||||| || ||||||||| |||||||  ||| |||||||||||||||||||||||||| |||||||    
T  13008032 aggtgctcaggtggacctggaggatgccttgagtaggttcacttttgacagcatctgcactattgcatttggatttgatcctaattgccttccaaacaag 13007933  T
Q  190 tttagtgagcttagagaaattgcttataaaaa 221  Q
    |||| |||||| ||||||||||||||| ||||    
T  13007932 tttaatgagctaagagaaattgcttatcaaaa 13007901  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 30367427 - 30367573
Alignment:
Q  64 ccatttattgatattgtgtctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggat 163  Q
    ||||||||| ||  ||| ||||||||||||||| |||||||||||||||||  ||||| |||||| || ||||||||| ||||||   ||||||||||||    
T  30367427 ccatttattaatgatgtatctgaagcaggttctgaggtggacttgcaagatatcttgaataggttcacttttgacagcatctgcattattgtatttggat 30367526  T
Q  164 ttgatcctaattgccttcaaaacaagtttagtgagcttagagaaatt 210  Q
    ||||| ||||||| |||| ||| ||| ||||||| ||||||||||||    
T  30367527 ttgattctaattggcttccaaataagattagtgatcttagagaaatt 30367573  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 14708278 - 14708147
Alignment:
Q  85 gaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaa 184  Q
    |||| |||| |||||||||| || ||||||  ||||| |||||| || ||||||||| ||| |||| ||||||||||||||||||| |||||  ||| ||    
T  14708278 gaagtaggtgctcaggtggatttacaagatgtcttgaataggttcacttttgacagcatcttcaccattgtatttggatttgatccaaattgttttccaa 14708179  T
Q  185 acaagtttagtgagcttagagaaattgcttat 216  Q
    |||||||||||||||||||||||||| |||||    
T  14708178 acaagtttagtgagcttagagaaatttcttat 14708147  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 13205329 - 13205172
Alignment:
Q  64 ccatttattgatattgtgtctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggat 163  Q
    |||||| |||||  ||| ||||||  |||| ||||| ||||| || | ||| ||||||||||||| || ||||| ||| |||||||  ||| ||||||||    
T  13205329 ccatttcttgatgatgtatctgaaataggtgctcagctggacctggaggatgccttgagtaggttcacttttgatagcatctgcactattgcatttggat 13205230  T
Q  164 ttgatcctaattgccttcaaaacaagtttagtgagcttagagaaattgcttataaaaa 221  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||||||| ||||    
T  13205229 ttgatcctaattgccttccaaacaagtttaatgagctaacagaaattgcttatcaaaa 13205172  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 13069536 - 13069667
Alignment:
Q  90 aggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaaacaag 189  Q
    |||| ||||||||||| || | ||| ||||||||||||| || ||||| ||| |||||||  ||| |||||||||||||||||||||||||| |||||||    
T  13069536 aggtgctcaggtggacctggaggatgccttgagtaggttcacttttgatagcatctgcactattgcatttggatttgatcctaattgccttctaaacaag 13069635  T
Q  190 tttagtgagcttagagaaattgcttataaaaa 221  Q
    |||| |||||| | |||||||| |||| ||||    
T  13069636 tttaatgagctaacagaaattgattatcaaaa 13069667  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 13101801 - 13101701
Alignment:
Q  121 agtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaaacaagtttagtgagcttagagaaattgcttataaaa 220  Q
    |||||||| || ||||||||| |||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |||    
T  13101801 agtaggttcacttttgacagcatctgcactattgcatttggatttgatcctaattgccttccaaacaagtttaatgagcttagggatattgcttatcaaa 13101702  T
Q  221 a 221  Q
    |    
T  13101701 a 13101701  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 13162373 - 13162234
Alignment:
Q  82 tctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttc 181  Q
    |||||||||||  |||||||||| ||||||||| |||| | |||||| || ||||| |||  ||||    || |||||||||||||||| ||||||||||    
T  13162373 tctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgcctgattttatttggatttgatccaaattgccttc 13162274  T
Q  182 aaaacaagtttagtgagcttagagaaattgcttataaaaa 221  Q
     ||||||||||| | |||||||||||||| ||||||||||    
T  13162273 caaacaagtttaatcagcttagagaaattccttataaaaa 13162234  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 13095251 - 13095112
Alignment:
Q  82 tctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttc 181  Q
    |||||||||||  |||||||||| ||||||||| |||| | |||||| || ||||| |||  |||||   || |||| ||||||||||| ||||||||||    
T  13095251 tctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgcatgattttattcggatttgatccaaattgccttc 13095152  T
Q  182 aaaacaagtttagtgagcttagagaaattgcttataaaaa 221  Q
     ||||||||||| | | |||| ||||||| ||||||||||    
T  13095151 caaacaagtttaatcaccttatagaaattccttataaaaa 13095112  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 13005767 - 13005641
Alignment:
Q  95 ctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttcaaaacaagtttag 194  Q
    |||| ||||||||| ||||| |||||| |||||| |  || |||| |  |||||| |||| ||||  |||||||||||||||||||| ||| ||||||||    
T  13005767 ctcaagtggacttggaagatgccttgaataggttcatcttcgacaacacctgcactgttgcattttcatttgatcctaattgccttccaaagaagtttag 13005668  T
Q  195 tgagcttagagaaattgcttataaaaa 221  Q
      ||||||||||||| ||| |||||||    
T  13005667 acagcttagagaaatcgctaataaaaa 13005641  T

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Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 13130680 - 13130543
Alignment:
Q  82 tctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaattgccttc 181  Q
    |||||||||||  |||| ||||| ||||||||| |||| | |||||| || ||||| |||  |||||   || |||| ||||||||||| ||||||||||    
T  13130680 tctgaagcaggagctcatgtggatttgcaagatgcctttaataggttcacctttgatagcagctgcatgattttattcggatttgatccaaattgccttc 13130581  T
Q  182 aaaacaagtttagtgagcttagagaaattgcttataaa 219  Q
     ||||||||||| | |||||||| ||||| | ||||||    
T  13130580 caaacaagtttaatcagcttagaaaaattccgtataaa 13130543  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 13272383 - 13272322
Alignment:
Q  155 tatttggatttgatcctaattgccttcaaaacaagtttagtgagcttagagaaattgcttat 216  Q
    |||||||||||||||||||||| ||||   ||||||| | ||||||| ||||||||||||||    
T  13272383 tatttggatttgatcctaattgtcttccttacaagttcaatgagcttcgagaaattgcttat 13272322  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 13080288 - 13080333
Alignment:
Q  153 tgtatttggatttgatcctaattgccttcaaaacaagtttagtgag 198  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||    
T  13080288 tgtatttggatttgatcctaattgccttcctaacaatttcagtgag 13080333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 31376354 - 31376225
Alignment:
Q  82 tctgaagcaggttctcaggtggacttgcaagattccttgagtaggttaacatttgacagcctctgcaccg-ttgtatttggatttgatcctaattgcctt 180  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||| || ||||||||| ||||||    ||||||||||||||||||||||||| |||    
T  31376354 tctgaagctggttctgaggtggacttgcaagatatcttgaataggttcacttttgacagcatctgcatttattgtatttggatttgatcctaattggctt 31376255  T
Q  181 caaaacaagtttagtgagcttagagaaatt 210  Q
    | ||| ||| ||||||| ||||||||||||    
T  31376254 ccaaataagattagtgatcttagagaaatt 31376225  T

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