View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_1 (Length: 1077)
Name: NF19839_low_1
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 754; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 274 - 1059
Target Start/End: Original strand, 52262300 - 52263084
Alignment:
| Q |
274 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatctt |
373 |
Q |
| |
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| T |
52262300 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccag-atccatctt |
52262398 |
T |
|
| Q |
374 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggac |
473 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52262399 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggac |
52262498 |
T |
|
| Q |
474 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262499 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccttctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
52262598 |
T |
|
| Q |
574 |
cataaggaaccaaaatttcatccattaaagggtacccagaatttccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccga |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262599 |
cataaggaaccaaaatttcatccattaaagggtacccagaatttccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccga |
52262698 |
T |
|
| Q |
674 |
tttctcgaaaacctgttcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagag |
773 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262699 |
tttctcgaaaacctattcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagag |
52262798 |
T |
|
| Q |
774 |
taagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatgagtagtataaactg |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52262799 |
taagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcacattggagttaggtgcaattatgggaatatgagtagtataaactg |
52262898 |
T |
|
| Q |
874 |
aaccaccaacatttggtattccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaac |
973 |
Q |
| |
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| T |
52262899 |
aaccaccaacatttggtattccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaac |
52262998 |
T |
|
| Q |
974 |
ggtttttattgcagagcaaacatctagaacgagcttgtgacatgtggataaacccaaaccaaatcgttctgaaacaagcctataag |
1059 |
Q |
| |
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| T |
52262999 |
ggtttttatttcagagcaaacatctagaacgagcttgtgacatgtggataaacccaaaccaaatcgttctgaaacaagcctataag |
52263084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 205 - 1033
Target Start/End: Original strand, 52250584 - 52251413
Alignment:
| Q |
205 |
tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagcttgaacagcag |
300 |
Q |
| |
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||||||||||||||||||||| | |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
52250584 |
tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcag |
52250683 |
T |
|
| Q |
301 |
caacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatg |
400 |
Q |
| |
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|||||||| || ||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
52250684 |
caacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatg |
52250783 |
T |
|
| Q |
401 |
caaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgca |
500 |
Q |
| |
|
|||||||||||||||||| | || |||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||| ||| |
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| T |
52250784 |
caaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgca |
52250883 |
T |
|
| Q |
501 |
tctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataaggaaccaaaatttcatccatta |
600 |
Q |
| |
|
|| ||| | | |||||||||| || || ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||| | |
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| T |
52250884 |
tccttactcagcttctgaatatcttccactttctcattaaacgcgtgctgtgtccaagtaagattctgatgtgtataaggaaccaaaattccatccatca |
52250983 |
T |
|
| Q |
601 |
aagggtacccagaatttccagcaacccaagcatctttcaaatctccct-tcacaattctcttaaacaaatccgatttctcgaaaacctgttcatcagaat |
699 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||| | ||||| | ||| | |||||||| ||||| || |||||| || |
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|
| T |
52250984 |
aagggaacccagaatttccaacaacccaagaatctttcaaat-tccctgtcatagctctctgatacattacagatttctccaaaacttgatcatcattat |
52251082 |
T |
|
| Q |
700 |
aagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagt |
799 |
Q |
| |
|
|||||||||| |||||| | | || | |||||||| |||||||| ||||||||||| |||||||||| |||||| | | |||||| |||||||||||| |
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| T |
52251083 |
aagaaccagggtaaccaagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagtaacagagtatgcagttttctggttcctctgagt |
52251182 |
T |
|
| Q |
800 |
gtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatgagtagtataaactgaaccaccaacatttggtattccagaa |
899 |
Q |
| |
|
|| || ||||||| ||||||||||| ||||| || ||||||||||| |||||||| || ||||| | |||||||||||||||||| |||||| || |
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|
| T |
52251183 |
ctgcctcttattga---aataagaattcacattgttcttaggtgcaattattggaatatgtgtggtatacattgaaccaccaacatttggcattccaaaa |
52251279 |
T |
|
| Q |
900 |
agaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaacggtttttattgcagagcaaacatcta |
999 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||| ||||| ||| ||||||||||||||||| | || ||||||| ||||| || | |
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| T |
52251280 |
agaccctcaaactcttgtttaatcaaattcatcttattttcatcaggccaagtaataaactttggcataagaactttcttgattgcagcacaaacctcaa |
52251379 |
T |
|
| Q |
1000 |
gaacgagcttgtgacatgtggataaacccaaacc |
1033 |
Q |
| |
|
|||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
52251380 |
gaaccagcttatgacaggtggatatacccaaacc |
52251413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
| Q |
120 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52262179 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa |
52262277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 52262110 - 52262173
Alignment:
| Q |
14 |
aaaatggaaagtcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
52262110 |
aaaatggaaagtcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta |
52262173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 361 - 510
Target Start/End: Complemental strand, 3698992 - 3698843
Alignment:
| Q |
361 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctctt |
460 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | | ||||||||| | | ||||| || ||||| || |
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|
| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
3698893 |
T |
|
| Q |
461 |
ctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
510 |
Q |
| |
|
||||||||| |||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
3698892 |
ctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3698843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 361 - 510
Target Start/End: Complemental strand, 3702680 - 3702531
Alignment:
| Q |
361 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctct |
459 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| | || || ||||||||| | || ||||| || ||||| | |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttt |
3702582 |
T |
|
| Q |
460 |
tctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
510 |
Q |
| |
|
|||||||||| |||||||| ||||||| || ||||||||||||||||||| |
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|
| T |
3702581 |
tctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3702531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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