View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_10 (Length: 547)
Name: NF19839_low_10
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Complemental strand, 1985716 - 1985194
Alignment:
| Q |
10 |
ataattctaaaacaacctttgatgagaatctttgggtgattcaagttcgaaaaaccctagaagaagagtttgaggaggaaaatggtgaattttctatatc |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1985716 |
ataattccaaaacaacctttgatgagaatctttgggtgattcaagttcggaaaaccctagaagaagagtttgaggaggaaaatggtgaattgtctatatc |
1985617 |
T |
|
| Q |
110 |
cattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactt |
209 |
Q |
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| T |
1985616 |
cattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactt |
1985517 |
T |
|
| Q |
210 |
tttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttgg |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1985516 |
tttgaaatgcaaaatcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttgg |
1985417 |
T |
|
| Q |
310 |
aacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcatactcgagttcct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
1985416 |
aacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttcct |
1985317 |
T |
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| Q |
410 |
tcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaatt |
509 |
Q |
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| T |
1985316 |
tcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaatt |
1985217 |
T |
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| Q |
510 |
ttgagggatattgtgatgcttga |
532 |
Q |
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||||||||||||||||||||||| |
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| T |
1985216 |
ttgagggatattgtgatgcttga |
1985194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 1947605 - 1948027
Alignment:
| Q |
10 |
ataattctaaaacaacctttgatgagaatctttgggtgattcaagttcgaaaaaccctagaagaagagtttgaggaggaaaatggtgaattttctatatc |
109 |
Q |
| |
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||||||||||| ||||||||||||| || ||||||||||| ||| |||||||||| |||||||| ||||| ||||| |||||||||| ||| || | |
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| T |
1947605 |
ataattctaaatcaacctttgatgaacttcgatgggtgattcatgttagaaaaacccttgaagaagaatttgaagaggaggatggtgaattatctgtaac |
1947704 |
T |
|
| Q |
110 |
cattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | | |||||| |
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| T |
1947705 |
cattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagaccagaactc |
1947804 |
T |
|
| Q |
210 |
tttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttgg |
309 |
Q |
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| ||||||||||| | ||||||||||| | |||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||||||||||| | |
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| T |
1947805 |
tatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagataaccttgttgaccaattgacaaagtatg |
1947904 |
T |
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| Q |
310 |
aacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcatactcgagttcct |
409 |
Q |
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|||||| | |||||| ||| |||||||||||||| |||||||| || ||||| ||| ||||||||||| ||||||||||||||| |||| ||||| || |
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| T |
1947905 |
aacaaagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttact |
1948004 |
T |
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| Q |
410 |
tcaattttatgccatgcaagaag |
432 |
Q |
| |
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|||| ||||||| |||||||||| |
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| T |
1948005 |
tcaaatttatgcaatgcaagaag |
1948027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 1978801 - 1978379
Alignment:
| Q |
10 |
ataattctaaaacaacctttgatgagaatctttgggtgattcaagttcgaaaaaccctagaagaagagtttgaggaggaaaatggtgaattttctatatc |
109 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||| ||||||||| ||| |||||||| ||||| |||||| ||||| |||| ||| || | |
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| T |
1978801 |
ataattctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaatccttgaagaagaatttgaagaggaagatggtaaattatctgtaac |
1978702 |
T |
|
| Q |
110 |
cattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
1978701 |
cattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagatcagaactc |
1978602 |
T |
|
| Q |
210 |
tttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttgg |
309 |
Q |
| |
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| ||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||| |||| ||||||| |||||||||||||||||||||| | |
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| T |
1978601 |
tatgaaatgcaaagttacaagcttgcagcaacaaaaagattcttgaaatcactacaaagtttcaaattagataaccttgttgaccaattgacaaagtatg |
1978502 |
T |
|
| Q |
310 |
aacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcatactcgagttcct |
409 |
Q |
| |
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|||||| |||||||||| |||||||||||||| |||||||| || ||||| ||| ||||||||||| ||||||||||||||| |||||||||| || |
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| T |
1978501 |
aacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttact |
1978402 |
T |
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| Q |
410 |
tcaattttatgccatgcaagaag |
432 |
Q |
| |
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|||| ||||||| |||||||||| |
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| T |
1978401 |
tcaaatttatgcaatgcaagaag |
1978379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 114 - 394
Target Start/End: Original strand, 5624756 - 5625036
Alignment:
| Q |
114 |
ttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactttttg |
213 |
Q |
| |
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|||||||| ||||||| ||| |||||||||||||| |||||||| ||| |||||| |||||||||| || ||||||| |||||||||||| |||| || |
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| T |
5624756 |
ttcaatgtaccaaagccacttttggctagtgatccagattcttatactcctcaacaaattgcaattggaccttaccatttttggcgtcaagagctttatg |
5624855 |
T |
|
| Q |
214 |
aaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttggaaca |
313 |
Q |
| |
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||||| | | | ||| |||| ||||||||||||||||||| ||| |||||||||||||| |||| || ||||||||||||||| || ||| || || |
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| T |
5624856 |
aaatggagatatataagattgcttcaacaaaaagattccaaagccaattacaaagtctcaagttagaacatattgttgaccaattgataaggttagagca |
5624955 |
T |
|
| Q |
314 |
aaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcatt |
394 |
Q |
| |
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|| |||||| |||||||||| |||| || |||| |||| ||||| ||| |||||||||| |||||||||| ||||| |
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| T |
5624956 |
caaaattagatcatgctaccataaatatttaaattttaatgttgaaacattgatgtggatgatggttgttgatgcctcatt |
5625036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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