View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_11 (Length: 537)

Name: NF19839_low_11
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_11
NF19839_low_11
[»] chr5 (6 HSPs)
chr5 (1-363)||(10554575-10554937)
chr5 (1-191)||(6476489-6476679)
chr5 (228-363)||(6476679-6476814)
chr5 (330-358)||(4084913-4084941)
chr5 (335-363)||(20854158-20854186)
chr5 (198-246)||(29088069-29088117)
[»] chr4 (6 HSPs)
chr4 (1-363)||(19080414-19080776)
chr4 (269-357)||(46168173-46168260)
chr4 (302-358)||(24374823-24374879)
chr4 (454-486)||(23690376-23690408)
chr4 (454-486)||(4896394-4896426)
chr4 (454-486)||(51296071-51296103)
[»] chr2 (8 HSPs)
chr2 (89-363)||(11007260-11007533)
chr2 (244-356)||(24933872-24933984)
chr2 (297-357)||(12725572-12725632)
chr2 (293-363)||(29719475-29719545)
chr2 (270-313)||(12725526-12725569)
chr2 (454-486)||(34442258-34442290)
chr2 (450-486)||(6365327-6365363)
chr2 (454-486)||(39454141-39454173)
[»] chr7 (7 HSPs)
chr7 (244-363)||(18977037-18977156)
chr7 (291-363)||(42420386-42420458)
chr7 (454-486)||(30180652-30180684)
chr7 (328-363)||(7668510-7668545)
chr7 (446-486)||(37856075-37856115)
chr7 (450-486)||(41966469-41966505)
chr7 (454-486)||(48866824-48866856)
[»] chr1 (6 HSPs)
chr1 (256-357)||(8548854-8548955)
chr1 (302-358)||(13262866-13262922)
chr1 (445-485)||(11822963-11823004)
chr1 (315-363)||(8987818-8987866)
chr1 (330-362)||(33504105-33504137)
chr1 (445-485)||(40612246-40612286)
[»] chr3 (6 HSPs)
chr3 (270-363)||(11349367-11349460)
chr3 (316-356)||(13701567-13701607)
chr3 (454-486)||(34733188-34733220)
chr3 (315-363)||(45081380-45081427)
chr3 (315-363)||(46150706-46150753)
chr3 (454-486)||(52727342-52727374)
[»] chr6 (3 HSPs)
chr6 (39-113)||(4939719-4939793)
chr6 (454-486)||(1897831-1897863)
chr6 (454-486)||(2582807-2582839)
[»] scaffold0085 (1 HSPs)
scaffold0085 (330-363)||(15912-15945)
[»] scaffold0009 (1 HSPs)
scaffold0009 (445-486)||(190779-190820)
[»] scaffold0057 (1 HSPs)
scaffold0057 (454-486)||(39024-39056)
[»] scaffold0026 (1 HSPs)
scaffold0026 (454-486)||(113770-113802)
[»] chr8 (1 HSPs)
chr8 (454-486)||(5359483-5359515)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 10554937 - 10554575
Alignment:
Q  1 tggaatttgccaaatcatgtaatttttccccctaaattcctaattgaattaagttgaattgtttccactcctatattataaacaactcaattggtttaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  10554937 tggaatttgccaaatcatgtaattttttcccctaaattcctaattgaattaagttgaattgcttccactcctatatcataaacaactcaattggtttaat 10554838  T
Q  101 tatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaacccaacacatata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10554837 tatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaacccagcacatata 10554738  T
Q  201 aagatattcagttgagcgatgaacgcaagcaattgaaggttggaaataaagagcgtgattctgtacatcaagaaagttggaaatttatgaagaccattta 300  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  10554737 aagagatttagttgagcgatgaacccaagcaattgaaggttggaaataaagagcgtgattccgtacatcaagaaagttggaaatttatggaaaccattta 10554638  T
Q  301 atgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  10554637 atgagaattatgagcctttgataaaacttaaatgaatggttgagatttggtgtcaacgaatcc 10554575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 6476489 - 6476679
Alignment:
Q  1 tggaatttgccaaatcatgtaatttttccccctaaattcctaattgaattaagttgaattgtttccactcctatattataaacaactcaattggtttaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6476489 tggaatttgccaaatcatgtaattttttcccctaaattcctaattgaattaagttgaattgcttccactcctatatcataaacaactcaattggtttaat 6476588  T
Q  101 tatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaaccca 191  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6476589 tatggtacctggacgtatcaaaaaccattgatggggaatcaacggaagagagaacataaagttcatgagatttgagagaacgtgaaaccca 6476679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 228 - 363
Target Start/End: Original strand, 6476679 - 6476814
Alignment:
Q  228 agcaattgaaggttggaaataaagagcgtgattctgtacatcaagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaac 327  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  6476679 agcaattgaaggttggaaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatgagaattatgagcctttgataaaac 6476778  T
Q  328 ttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6476779 ttaaatgaatggttgagatttggtgtcaacgaatcc 6476814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 358
Target Start/End: Complemental strand, 4084941 - 4084913
Alignment:
Q  330 aaatgaatggttgagatttggtgtcaacg 358  Q
    |||||||||||||||||||||||||||||    
T  4084941 aaatgaatggttgagatttggtgtcaacg 4084913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 20854186 - 20854158
Alignment:
Q  335 aatggttgagatttggtgtcaacggatcc 363  Q
    |||||||||||||||||||||||||||||    
T  20854186 aatggttgagatttggtgtcaacggatcc 20854158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 29088117 - 29088069
Alignment:
Q  198 ataaagatattcagttgagcgatgaacgcaagcaattgaaggttggaaa 246  Q
    ||||||| ||||||||||||||||||| ||| ||||||| |||| ||||    
T  29088117 ataaagagattcagttgagcgatgaacacaaccaattgagggtttgaaa 29088069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 19080776 - 19080414
Alignment:
Q  1 tggaatttgccaaatcatgtaatttttccccctaaattcctaattgaattaagttgaattgtttccactcctatattataaacaactcaattggtttaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19080776 tggaatttgccaaatcatgtaattttttcccctaaattcctaattgaattaagttgaattgcttccactcctatatcataaacaactcaattggtttaat 19080677  T
Q  101 tatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaacccaacacatata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19080676 tatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaacccagcacatata 19080577  T
Q  201 aagatattcagttgagcgatgaacgcaagcaattgaaggttggaaataaagagcgtgattctgtacatcaagaaagttggaaatttatgaagaccattta 300  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  19080576 aagagatttagttgagcgatgaacccaagcaattgaaggttggaaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccattta 19080477  T
Q  301 atgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  19080476 atgagaattatgagcctttgataaaacttaaatgaatggttgaaatttggtgtcaacgaatcc 19080414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 46168260 - 46168173
Alignment:
Q  269 caagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaac 357  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||  ||||| ||||||||    
T  46168260 caagaaagttggaaatttatggagaccatttaatgaaaattatga-gctttgatcaaacttaaatgaatggttaggatttagtgtcaac 46168173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 24374879 - 24374823
Alignment:
Q  302 tgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacg 358  Q
    |||||||||| | |||||||||||||||||||| | |||||||||||||||||||||    
T  24374879 tgagaattataagcctttgatcaaacttaaatggaaggttgagatttggtgtcaacg 24374823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 23690376 - 23690408
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||||||||||||||||||||||||||||||||    
T  23690376 aaaaattgtttcaaatagatgttcaaatatcac 23690408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 4896426 - 4896394
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  4896426 aaaagttgtttcaaatagatgttcaaatatcac 4896394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 51296103 - 51296071
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  51296103 aaaagttgtttcaaatagatgttcaaatatcac 51296071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 89 - 363
Target Start/End: Complemental strand, 11007533 - 11007260
Alignment:
Q  89 aattggtttaattatggtacctggacatatcaaaaaccattgatggggaatcaacgggagagagaacataaagttcatgagatttgagagaacgtgaaac 188  Q
    |||||||||||||||| | |||||| | |  ||||| |||||||||| |||||||||||||| ||| | || ||||||||||||||||| | ||||||||    
T  11007533 aattggtttaattatgctgcctggatagagaaaaaatcattgatggg-aatcaacgggagagtgaataaaaggttcatgagatttgagaaaccgtgaaac 11007435  T
Q  189 ccaacacatataaagatattcagttgagcgatgaacgcaagcaattgaaggttggaaataaagagcgtgattctgtacatcaagaaagttggaaatttat 288  Q
    |||  ||||||||||| ||||||||||| ||||||| |  |  ||||||||||||||||| |||||||||||| || |||||||||||||| |||||| |    
T  11007434 ccagaacatataaagagattcagttgagagatgaacccgggatattgaaggttggaaatagagagcgtgattcggtgcatcaagaaagttgaaaatttgt 11007335  T
Q  289 gaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    | ||||||||||||||||||||||| |||||||||||| || | |||||||||||||||| ||||||||| ||||    
T  11007334 ggagaccatttaatgagaattatgagcctttgatcaaatttgattgaatggttgagatttagtgtcaacgaatcc 11007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 24933984 - 24933872
Alignment:
Q  244 aaataaagagcgtgattctgtacatcaagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttga 343  Q
    ||||||||||| ||||||| | |||||||||||||  ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24933984 aaataaagagcatgattctatgcatcaagaaagttaaaaatttatggagaccatttaatgagaattatgagcctttgatcaaacttaaatgaatggttga 24933885  T
Q  344 gatttggtgtcaa 356  Q
    |||||||||||||    
T  24933884 gatttggtgtcaa 24933872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 12725572 - 12725632
Alignment:
Q  297 tttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaac 357  Q
    |||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12725572 tttaataaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaac 12725632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 29719545 - 29719475
Alignment:
Q  293 accatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    |||||| | |||||||||||| | |||||||||||||||||| | ||||||||||||||||||||| ||||    
T  29719545 accattaactgagaattatgagcatttgatcaaacttaaatggagggttgagatttggtgtcaacgaatcc 29719475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 12725526 - 12725569
Alignment:
Q  270 aagaaagttggaaatttatgaagaccatttaatgagaattatga 313  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  12725526 aagaaagttggaaatttatggagaccatttaatgaaaattatga 12725569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 34442258 - 34442290
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||||||||||||||||||||||||||||||||    
T  34442258 aaaaattgtttcaaatagatgttcaaatatcac 34442290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 6365327 - 6365363
Alignment:
Q  450 tcataaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||||||| |||||| |||||||||||||||||||||    
T  6365327 tcataaaagttgttttaaatagatgttcaaatatcac 6365363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 39454173 - 39454141
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  39454173 aaaacttgtttcaaatagatgttcaaatatcac 39454141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 18977156 - 18977037
Alignment:
Q  244 aaataaagagcgtgattctgtacatcaagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttga 343  Q
    ||||||||||| ||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18977156 aaataaagagcatgattctatgcatcaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttgatcaaacttaaatgaatggttga 18977057  T
Q  344 gatttggtgtcaacggatcc 363  Q
    ||||||||||||||| ||||    
T  18977056 gatttggtgtcaacgaatcc 18977037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 42420458 - 42420386
Alignment:
Q  291 agaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  42420458 agaccattaattgagaattatgagcctttgatcaaatttaaatgaagggttgagatatggtgtcaacggatcc 42420386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 30180652 - 30180684
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||||||||||||||||||||||||||||||||    
T  30180652 aaaaattgtttcaaatagatgttcaaatatcac 30180684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 7668545 - 7668510
Alignment:
Q  328 ttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7668545 ttaaatgaatggttgagatttggtgtcaacgaatcc 7668510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 37856115 - 37856075
Alignment:
Q  446 attatcataaaaattgtttcaaatagatgttcaaatatcac 486  Q
    ||||||| |||| |||||||||||||||||| |||||||||    
T  37856115 attatcacaaaagttgtttcaaatagatgtttaaatatcac 37856075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 41966469 - 41966505
Alignment:
Q  450 tcataaaaattgtttcaaatagatgttcaaatatcac 486  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  41966469 tcataaaaattgtttaaaatagttgttcaaatatcac 41966505  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 48866856 - 48866824
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  48866856 aaaagttgtttcaaatagatgttcaaatatcac 48866824  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 8548955 - 8548854
Alignment:
Q  256 tgattctgtacatcaagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtca 355  Q
    |||||| || ||| |||||||||| ||||||||| ||||||| |||| |||||||| | |||||||| ||  ||||||||||||||||| ||| ||||||    
T  8548955 tgattcggtgcataaagaaagttgaaaatttatggagaccatgtaataagaattataagcctttgattaactttaaatgaatggttgagttttagtgtca 8548856  T
Q  356 ac 357  Q
    ||    
T  8548855 ac 8548854  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 13262922 - 13262866
Alignment:
Q  302 tgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacg 358  Q
    |||||||||| | |||||||||||||||||||| | |||||||||||||||||||||    
T  13262922 tgagaattataagcctttgatcaaacttaaatggagggttgagatttggtgtcaacg 13262866  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 11823004 - 11822963
Alignment:
Q  445 aattatcataaaaattgt-ttcaaatagatgttcaaatatca 485  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  11823004 aattgtcataaaaattgtcttcaaatagatgttcaaatatca 11822963  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 8987866 - 8987818
Alignment:
Q  315 cctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||||||||  ||| || ||||||||||||||||||||||| ||||    
T  8987866 cctttgatcaaatataactgtatggttgagatttggtgtcaacgaatcc 8987818  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 33504137 - 33504105
Alignment:
Q  330 aaatgaatggttgagatttggtgtcaacggatc 362  Q
    ||||| |||||||||||||||||||||||||||    
T  33504137 aaatggatggttgagatttggtgtcaacggatc 33504105  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 485
Target Start/End: Original strand, 40612246 - 40612286
Alignment:
Q  445 aattatcataaaaattgtttcaaatagatgttcaaatatca 485  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  40612246 aattatcataaaaattgtatgaaatagttgttcaaatatca 40612286  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 11349367 - 11349460
Alignment:
Q  270 aagaaagttggaaatttatgaagaccatttaatgagaattatgaccctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||||| || ||||||||| ||||  ||||||||||||| ||| |||||||||||||||||||| ||||||| | ||||  ||||||| ||||    
T  11349367 aagaaaggtgaaaatttatggagactttttaatgagaattgtgagcctttgatcaaacttaaatggatggttgtgttttgacgtcaacgaatcc 11349460  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 13701607 - 13701567
Alignment:
Q  316 ctttgatcaaacttaaatgaatggttgagatttggtgtcaa 356  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  13701607 ctttgatcaaacttaaatggagggttgagatttcgtgtcaa 13701567  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 34733220 - 34733188
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  34733220 aaaagttgtttcaaatagatgttcaaatatcac 34733188  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 45081380 - 45081427
Alignment:
Q  315 cctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    |||||||||||| | |||| |||||||||||||||||||||||| ||||    
T  45081380 cctttgatcaaa-taaaataaatggttgagatttggtgtcaacgaatcc 45081427  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 46150706 - 46150753
Alignment:
Q  315 cctttgatcaaacttaaatgaatggttgagatttggtgtcaacggatcc 363  Q
    |||||||||||| | |||| |||||||||||||||||||||||| ||||    
T  46150706 cctttgatcaaa-taaaataaatggttgagatttggtgtcaacgaatcc 46150753  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 52727374 - 52727342
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    ||||||||||||||||||||||| |||||||||    
T  52727374 aaaaattgtttcaaatagatgtttaaatatcac 52727342  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 4939793 - 4939719
Alignment:
Q  39 cctaattgaattaagttgaattgtttccactcctatattataaacaactcaattggtttaattatggtacctgga 113  Q
    |||||| ||||| |||||||| | ||||| |||| ||| ||||||||||||||||||||||||| | ||||||||    
T  4939793 cctaatagaatttagttgaatcgcttccaatcctctatcataaacaactcaattggtttaattaggatacctgga 4939719  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 1897831 - 1897863
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  1897831 aaaagttgtttcaaatagatgttcaaatatcac 1897863  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 2582807 - 2582839
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  2582807 aaaagttgtttcaaatagatgttcaaatatcac 2582839  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 15945 - 15912
Alignment:
Q  330 aaatgaatggttgagatttggtgtcaacggatcc 363  Q
    ||||| ||||||||||||||||||||||||||||    
T  15945 aaatgtatggttgagatttggtgtcaacggatcc 15912  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 190820 - 190779
Alignment:
Q  445 aattatcataaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||||||| ||||||||||||||||| || ||||||||||||    
T  190820 aattatcacaaaaattgtttcaaataaatattcaaatatcac 190779  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 39024 - 39056
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  39024 aaaagttgtttcaaatagatgttcaaatatcac 39056  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 113770 - 113802
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    ||||||||||||||||||||||| |||||||||    
T  113770 aaaaattgtttcaaatagatgtttaaatatcac 113802  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 5359483 - 5359515
Alignment:
Q  454 aaaaattgtttcaaatagatgttcaaatatcac 486  Q
    |||| ||||||||||||||||||||||||||||    
T  5359483 aaaagttgtttcaaatagatgttcaaatatcac 5359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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