View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_13 (Length: 462)

Name: NF19839_low_13
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_13
NF19839_low_13
[»] chr2 (14 HSPs)
chr2 (121-452)||(41969291-41969621)
chr2 (148-353)||(147206-147410)
chr2 (212-360)||(17560790-17560939)
chr2 (194-360)||(140914-141080)
chr2 (273-428)||(41501050-41501201)
chr2 (237-384)||(40800127-40800273)
chr2 (227-348)||(36069336-36069458)
chr2 (16-50)||(41969623-41969657)
chr2 (254-360)||(32071317-32071428)
chr2 (326-360)||(13779129-13779163)
chr2 (212-310)||(32648163-32648260)
chr2 (272-306)||(45258126-45258160)
chr2 (272-320)||(23257850-23257898)
chr2 (211-247)||(44942914-44942950)
[»] chr1 (4 HSPs)
chr1 (212-353)||(30732551-30732692)
chr1 (212-316)||(5696744-5696848)
chr1 (272-308)||(21682564-21682600)
chr1 (272-317)||(32875451-32875496)
[»] chr5 (1 HSPs)
chr5 (227-360)||(34443312-34443447)
[»] chr4 (6 HSPs)
chr4 (256-354)||(33085794-33085891)
chr4 (226-316)||(35043060-35043150)
chr4 (273-316)||(43543272-43543315)
chr4 (272-306)||(50151778-50151812)
chr4 (255-348)||(53402529-53402622)
chr4 (225-285)||(5321881-5321941)
[»] chr3 (4 HSPs)
chr3 (212-388)||(5528292-5528468)
chr3 (255-316)||(35314083-35314144)
chr3 (291-388)||(27158271-27158368)
chr3 (254-347)||(49317600-49317692)
[»] chr6 (3 HSPs)
chr6 (269-360)||(4380313-4380404)
chr6 (272-354)||(11714205-11714287)
chr6 (227-316)||(30655834-30655923)
[»] scaffold0012 (1 HSPs)
scaffold0012 (225-324)||(243942-244041)
[»] chr8 (3 HSPs)
chr8 (212-307)||(15663499-15663594)
chr8 (262-317)||(23129392-23129447)
chr8 (272-310)||(26999204-26999242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (272-308)||(120985-121021)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 121 - 452
Target Start/End: Complemental strand, 41969621 - 41969291
Alignment:
Q  121 gaagacacacatcacctaaaggaacatgctaatatcgatgcacaccacctaagagaagcgcgaccccgtacaacttatgtcgtacgtgtatcctccaacg 220  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||| || |||| ||||||||||| |||| ||||  ||||    
T  41969621 gaagacacacatcacctaaaggaacatgctagtatcgatgcacaccacctaaatgaagcgtgactccatacagcttatgtcgtatgtgtgtcctttaacg 41969522  T
Q  221 gcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttcc 320  Q
    |||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  41969521 gctttctgatgaggcgctgtatttcacataaatagttagcacctccttcctctatataagggtgacttcgcgtcaccctcaaggtacgatatatttttcc 41969422  T
Q  321 acactttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcaggcaggcaccctccgttccaccacaaagacttc 420  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  41969421 acactttttacccattcaacctcatttcttacactgacttggatgttgaagt-ttgatgtgcctgcaggcaggcaccctccgttccaccacaaagacttc 41969323  T
Q  421 gtcgccacttcaccgttaccgtaaccttcatc 452  Q
    ||||||||||||||||||||||||||||||||    
T  41969322 gtcgccacttcaccgttaccgtaaccttcatc 41969291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 353
Target Start/End: Complemental strand, 147410 - 147206
Alignment:
Q  148 gctaatatcgatgcacaccacctaagagaagcgcgaccccgtacaacttatgtcgtacgtgtatcctccaacggcttcctgatgaggcgccacatttcac 247  Q
    |||| |||||||||| |||||||    |||||||| |||||| || |||| ||| ||| ||| |||| ||  ||| |||||| ||||| |||||||||||    
T  147410 gctagtatcgatgcaaaccaccttcccgaagcgcg-ccccgtgcatcttacgtcatacatgtgtccttcacgggcctcctgacgaggcaccacatttcac 147312  T
Q  248 ataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcattt 347  Q
      || | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||  | |||||| |||||  |||||| |||||||||||| ||    
T  147311 gaaagtggttagcgcctccttcctctatataagggtgaccttgcgtcaccctcaaggtacgtttcattttcccacatattttacacattcaacctcactt 147212  T
Q  348 cttaca 353  Q
    | ||||    
T  147211 cctaca 147206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 17560939 - 17560790
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 311  Q
    ||||||||||||  |||||||||| || | |||||   || | |||||| ||||||||  |||||||||||||| | ||||||||||||||||||||||     
T  17560939 cctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacaatt 17560840  T
Q  312 catttttccacac-tttttacccattcaacctcatttcttacactaactt 360  Q
    ||||||||||||| || |||| |||||||||||||||| |||||| ||||    
T  17560839 catttttccacacattcttacacattcaacctcatttcctacactgactt 17560790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 360
Target Start/End: Original strand, 140914 - 141080
Alignment:
Q  194 cttatgtcgtacgtgtatcctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgt 293  Q
    |||| ||||||| |||  ||| ||||| | |||| |||||||||||||||||||  ||   ||||||||||||||||| |||||||||| |||| || ||    
T  140914 cttacgtcgtacatgtggccttcaacgccctcctcatgaggcgccacatttcacggaagcggttagcacctccttcctttatataagggagactatgtgt 141013  T
Q  294 caccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacactaactt 360  Q
    |||| |  |||||  || |||| | ||||||||||||| ||||||||||| ||||||| ||| ||||    
T  141014 caccttataggtatgattcattatcccacactttttacacattcaacctcgtttcttatactgactt 141080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 428
Target Start/End: Original strand, 41501050 - 41501201
Alignment:
Q  273 tatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacactaacttagatgttgaag 371  Q
    |||||||| ||| ||  |||||||||||||||||| || || ||| |||||| ||||||| |||| ||||||||||| |||||| ||||   ||||  |     
T  41501050 tatataagagtgtctccgcgtcaccctcaaggtacgattca-tttcccacacttttttacacattaaacctcatttcctacactgacttgagtgttagat 41501148  T
Q  372 tgcttatgtgcctgcaggcaggcaccctccgttccaccacaaagacttcgtcgccac 428  Q
    |||| ||||||||    |||||||||||||||||||||||||||||||| |||||||    
T  41501149 tgctaatgtgcct----gcaggcaccctccgttccaccacaaagacttcatcgccac 41501201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 384
Target Start/End: Complemental strand, 40800273 - 40800127
Alignment:
Q  237 ccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt-ttccacactttttacccat 335  Q
    |||||||||||  || | ||||||| |||||||  |||||||||||||| || |||||||||||||||||| || |||||  ||||||| |||||| ||     
T  40800273 ccacatttcacggaagtcgttagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcctccacac-ttttacacaa 40800175  T
Q  336 tcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcct 384  Q
    ||||| ||||||| |||||||| ||  | ||||||||||| | ||||||    
T  40800174 tcaacatcatttc-tacactaatttgaacgttgaagtgctaacgtgcct 40800127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 36069458 - 36069336
Alignment:
Q  227 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttc-cacact 325  Q
    |||||||||||| ||||||||  ||  ||||||| |||||||||||| |  || || |||| |||||||||||||||||||||| |||||  |  ||| |    
T  36069458 tgatgaggcgccgcatttcacggaagcagttagcgcctccttcctctttcgaaaggcgactctgcgtcaccctcaaggtacaattcatttcccaaacatt 36069359  T
Q  326 ttttacccattcaacctcatttc 348  Q
    | |||| ||||||||||||||||    
T  36069358 tcttacacattcaacctcatttc 36069336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 41969657 - 41969623
Alignment:
Q  16 catgatataaatgtgtgatccattcatcctgactt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  41969657 catgatataaatgtgtgatccattcatcctgactt 41969623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 32071317 - 32071428
Alignment:
Q  254 agttagcacctccttcctctatata--agggtga-ctttgcgtcaccctcaaggtacaatacatttttcc-acac-tttttacccattcaacctcatttc 348  Q
    |||||||||||||||||| ||||||  ||||| | || |||||| |||||||||||  || ||||||||| | || ||||||| |||||||||||||||     
T  32071317 agttagcacctccttcctatatatataagggtaatctctgcgtcgccctcaaggtatgattcatttttcctatacatttttacacattcaacctcatttt 32071416  T
Q  349 ttacactaactt 360  Q
     |||||||||||    
T  32071417 atacactaactt 32071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 13779129 - 13779163
Alignment:
Q  326 ttttacccattcaacctcatttcttacactaactt 360  Q
    |||||| ||||||||||||||||||||||||||||    
T  13779129 ttttacacattcaacctcatttcttacactaactt 13779163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 32648260 - 32648163
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaat 310  Q
    |||||||| ||||||||||||||| ||| |||||||  ||   |||||||| ||||||  |||||||| |||||||   ||||||| ||||||||||||    
T  32648260 cctccaacagcttcctgatgaggcacca-atttcacggaagccgttagcacatccttctcctatataaaggtgactcaacgtcaccttcaaggtacaat 32648163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 45258126 - 45258160
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggta 306  Q
    |||||||||||||||||||| ||||||||||||||    
T  45258126 ctatataagggtgactttgcttcaccctcaaggta 45258160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 23257898 - 23257850
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttttcc 320  Q
    ||||||||||||||| |||  |||||||||||||||||| || ||||||    
T  23257898 ctatataagggtgaccttgattcaccctcaaggtacaattcacttttcc 23257850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 44942950 - 44942914
Alignment:
Q  211 tcctccaacggcttcctgatgaggcgccacatttcac 247  Q
    |||||||||||| |||||||||||| |||||||||||    
T  44942950 tcctccaacggcctcctgatgaggcaccacatttcac 44942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 353
Target Start/End: Complemental strand, 30732692 - 30732551
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 311  Q
    |||| |||||| || |||||||||||||||||||| | ||  ||||||| |||||| | ||||||||||||||||| ||| ||||||| ||||||||||     
T  30732692 cctctaacggcctcttgatgaggcgccacatttcataaaagcagttagctcctcctccttctatataagggtgactctgcatcacccttaaggtacaatg 30732593  T
Q  312 catttttccacactttttacccattcaacctcatttcttaca 353  Q
    |||||  ||||| |||| ||  ||||||||||||||| ||||    
T  30732592 catttgcccacaattttgacaaattcaacctcatttcctaca 30732551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 5696744 - 5696848
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 311  Q
    ||||||||||||  | ||||||||||| |||||||||||| | |||||| |||||| || ||||||||||| || | ||||||||||||||||||| ||     
T  5696744 cctccaacggctctcggatgaggcgccgcatttcacataatttgttagcgcctcctccccctatataagggcgattctgcgtcaccctcaaggtacgatt 5696843  T
Q  312 cattt 316  Q
    |||||    
T  5696844 cattt 5696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 21682564 - 21682600
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtaca 308  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21682564 ctatataagggtgaatttgcgtcaccctcaaggtaca 21682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 32875451 - 32875496
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttt 317  Q
    ||||||||||||||||   |||||||||||||||||||| ||||||    
T  32875451 ctatataagggtgactcaacgtcaccctcaaggtacaattcatttt 32875496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 360
Target Start/End: Complemental strand, 34443447 - 34443312
Alignment:
Q  227 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaa-tacatttttccacac- 324  Q
    ||||||||| |||||||||||  ||  ||||||  ||||||| |||| |||||||| |||| ||||||||||||||||||||| | |||||| ||||||     
T  34443447 tgatgaggctccacatttcacggaagcagttagagcctcctttctctgtataagggcgactctgcgtcaccctcaaggtacaatttcattttcccacaca 34443348  T
Q  325 tttttacccattcaacctcatttcttacactaactt 360  Q
     |||||| |||||||| ||||||| |||||| ||||    
T  34443347 cttttacacattcaacttcatttcctacactgactt 34443312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 33085794 - 33085891
Alignment:
Q  256 ttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacac 354  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||| |||| || |||||| ||||| |||||||   |||||||||||||| |||||    
T  33085794 ttagcacctccgtcctctatgtaagggtgacttcgcgtcaccctcaa-gtaccattcattttcccacattttttacgtgttcaacctcatttcctacac 33085891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 35043060 - 35043150
Alignment:
Q  226 ctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 316  Q
    ||||||||||||| |||| |||  || |||||||| |||||||||||||||||| |||||||  ||||||||||||| |||| || |||||    
T  35043060 ctgatgaggcgccgcattacacggaagtagttagcgcctccttcctctatataatggtgactccgcgtcaccctcaatgtacgattcattt 35043150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 43543272 - 43543315
Alignment:
Q  273 tatataagggtgactttgcgtcaccctcaaggtacaatacattt 316  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||    
T  43543272 tatataaggatgactttgcgtcaccctcaagatacaattcattt 43543315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 50151778 - 50151812
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggta 306  Q
    |||||||||||||||||||| ||||||||||||||    
T  50151778 ctatataagggtgactttgcttcaccctcaaggta 50151812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 53402622 - 53402529
Alignment:
Q  255 gttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttc 348  Q
    |||||| |||| |||  |||||||||||||| || |||||||||||||||||| || || ||| ||||||  |||||| |||||| |||||||||    
T  53402622 gttagcgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattca-tttcccacacacttttacacattcatcctcatttc 53402529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 5321881 - 5321941
Alignment:
Q  225 cctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtga 285  Q
    |||||||||||||||||||||||| || | |||||   ||||||| ||||||||| |||||    
T  5321881 cctgatgaggcgccacatttcacagaagtcgttagtgtctccttcttctatataaaggtga 5321941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 388
Target Start/End: Original strand, 5528292 - 5528468
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 311  Q
    |||||||| ||| ||| |||| ||||| ||| ||||| | |  ||| || ||||||||  |||||||||||||| | ||||||||||||||||||| ||     
T  5528292 cctccaacagctccctaatgaagcgccgcatctcacaaagaccgttggcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacgatt 5528391  T
Q  312 catttttc-cacactttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcag 388  Q
     |||| || ||||| |||||| |||||||||||||||| ||| || |||| | ||||| | |||| | ||||||||||    
T  5528392 tatttctcacacac-ttttacacattcaacctcatttcctactctgacttgggtgttggaatgctaacgtgcctgcag 5528468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 35314083 - 35314144
Alignment:
Q  255 gttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 316  Q
    |||||| |||| |||||||||||||||| ||||| |||||||||||||||||| || |||||    
T  35314083 gttagcgcctcattcctctatataagggagacttagcgtcaccctcaaggtacgattcattt 35314144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 27158368 - 27158271
Alignment:
Q  291 cgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcag 388  Q
    |||||||||||||||||||| || ||| ||||||  |||||| |||||||||| ||||| |||||| |||||  ||||| |||||| | ||| ||||||    
T  27158368 cgtcaccctcaaggtacaattca-tttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgttggagtgctaaagtgtctgcag 27158271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 49317692 - 49317600
Alignment:
Q  254 agttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcattt 347  Q
    ||||||| ||| | ||||||||||||| ||||||  ||||| ||||||||| || || ||||||||   ||||||||| |||| ||||||||||    
T  49317692 agttagcgccttcgtcctctatataagagtgactccgcgtc-ccctcaaggcaccattcatttttctgtactttttacacatttaacctcattt 49317600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 4380404 - 4380313
Alignment:
Q  269 cctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacactaactt 360  Q
    ||||||||||||| |||||  |||||| ||||||||||| || |||||| | ||||||||||| ||||||||| | ||||  ||||||||||    
T  4380404 cctctatataaggatgactccgcgtcatcctcaaggtaccattcattttcctacactttttacacattcaaccccgtttccaacactaactt 4380313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 11714287 - 11714205
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacac 354  Q
    ||||||||||||||||   |||||||||||||||||||| || ||| ||| || ||||||| |||||||||||||||| |||||    
T  11714287 ctatataagggtgactccacgtcaccctcaaggtacaattca-tttcccatacatttttacacattcaacctcatttcctacac 11714205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 30655923 - 30655834
Alignment:
Q  227 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 316  Q
    |||||||||||| ||||||||  || |  |||||| ||||||| | ||||||||||||| |  || |||||||||||||||||| |||||    
T  30655923 tgatgaggcgccgcatttcacggaattctttagcatctccttcttgtatataagggtgattccgcatcaccctcaaggtacaattcattt 30655834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 244041 - 243942
Alignment:
Q  225 cctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac 324  Q
    |||||||||||| ||||||||||| ||  |||||||  ||||||||||||| || |||||| |   | ||||| ||||||||| || |||||| ||||||    
T  244041 cctgatgaggcgacacatttcacagaagcagttagcgtctccttcctctatttacgggtgagtccacatcaccttcaaggtacgattcattttcccacac 243942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 15663499 - 15663594
Alignment:
Q  212 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtac 307  Q
    |||||||||||| |||||||||||||  ||||||||  || | ||||||| | | |||  |||||||||| |||||   |||||||||||||||||    
T  15663499 cctccaacggctccctgatgaggcgctgcatttcacggaagtcgttagcatcactttcacctatataaggatgactcaacgtcaccctcaaggtac 15663594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 23129447 - 23129392
Alignment:
Q  262 cctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttt 317  Q
    |||||||| |||||||||||||||||| |||||||||| || |||| || ||||||    
T  23129447 cctccttcgtctatataagggtgacttggcgtcaccctgaaagtacgattcatttt 23129392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 26999242 - 26999204
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtacaat 310  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  26999242 ctatataagggtgacttagcatcaccctcaaggtacaat 26999204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 120985 - 121021
Alignment:
Q  272 ctatataagggtgactttgcgtcaccctcaaggtaca 308  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  120985 ctatataagggtgaatttgcttcaccctcaaggtaca 121021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University