View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_14 (Length: 417)

Name: NF19839_low_14
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_14
NF19839_low_14
[»] chr3 (2 HSPs)
chr3 (19-408)||(37463037-37463426)
chr3 (27-84)||(39428718-39428774)
[»] chr2 (36 HSPs)
chr2 (20-404)||(10353664-10354048)
chr2 (18-397)||(9321526-9321896)
chr2 (271-404)||(9357723-9357856)
chr2 (18-152)||(8572745-8572879)
chr2 (19-181)||(9060343-9060508)
chr2 (254-404)||(9275064-9275214)
chr2 (267-397)||(9316578-9316708)
chr2 (18-166)||(10372639-10372787)
chr2 (18-167)||(9292684-9292833)
chr2 (254-397)||(9329149-9329292)
chr2 (232-404)||(9283608-9283777)
chr2 (18-104)||(9316844-9316930)
chr2 (271-404)||(10348325-10348458)
chr2 (266-404)||(9292471-9292609)
chr2 (260-384)||(7115095-7115219)
chr2 (271-404)||(8572959-8573092)
chr2 (18-113)||(10336621-10336716)
chr2 (20-113)||(7114891-7114984)
chr2 (19-113)||(9275333-9275427)
chr2 (18-104)||(9357935-9358021)
chr2 (19-103)||(12011838-12011922)
chr2 (19-114)||(12005410-12005505)
chr2 (18-104)||(9329418-9329504)
chr2 (18-104)||(10348622-10348708)
chr2 (18-103)||(12018158-12018243)
chr2 (24-103)||(9365415-9365494)
chr2 (263-404)||(10372404-10372545)
chr2 (18-112)||(9283418-9283512)
chr2 (270-404)||(10336378-10336512)
chr2 (27-152)||(14551091-14551215)
chr2 (19-99)||(11986770-11986850)
chr2 (27-103)||(7612716-7612792)
chr2 (27-94)||(17565367-17565434)
chr2 (344-395)||(11987017-11987068)
chr2 (347-406)||(12005657-12005716)
chr2 (192-220)||(9292637-9292665)
[»] scaffold0667 (2 HSPs)
scaffold0667 (270-404)||(5020-5154)
scaffold0667 (18-113)||(5269-5364)
[»] chr4 (3 HSPs)
chr4 (271-404)||(26575416-26575549)
chr4 (20-183)||(26575622-26575782)
chr4 (27-113)||(561980-562066)
[»] chr8 (2 HSPs)
chr8 (18-131)||(41965966-41966079)
chr8 (279-406)||(41966185-41966312)
[»] chr1 (4 HSPs)
chr1 (27-152)||(29452604-29452729)
chr1 (27-152)||(29467078-29467203)
chr1 (27-152)||(29423985-29424110)
chr1 (27-152)||(29442612-29442737)
[»] chr5 (1 HSPs)
chr5 (27-102)||(36225571-36225646)
[»] chr7 (1 HSPs)
chr7 (27-103)||(45238749-45238825)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 37463426 - 37463037
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463426 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatc 37463327  T
Q  119 cgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacgatttctctaatcgaatcaattcgattattccactcaaccatcctttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463326 cgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacgatttctctaatcgaatcaattcgattattccactcaaccatcctttc 37463227  T
Q  219 aaaggtaacagccccaacatcgatccttacacacggcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463226 aaaggtaacagccccaacatcgatccttacacacggcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaa 37463127  T
Q  319 tcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccctatgc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463126 tcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccctatgc 37463037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 39428774 - 39428718
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttca 84  Q
    |||| |||||||||||||||||||| | ||||||| |||||| |||| ||||||||||    
T  39428774 ctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca 39428718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 10354048 - 10353664
Alignment:
Q  20 atcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatcc 119  Q
    |||||||||| ||||||||||||||||||||||| |||||||  ||||||||||  |||| |||||||||||||| |||| |||| ||| ||||||||||    
T  10354048 atcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatcc 10353949  T
Q  120 gtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacgatttctctaatcgaatcaattcgat------tattccactcaaccatc 213  Q
     ||||  |||||  ||| | ||||||||||||| |  |||||||||||   ||||||||| ||| |  ||  |||||      | |||||| |||||| |    
T  10353948 ttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgat---gatttctctgatccagacacatcgatgttactttttccacacaaccacc 10353852  T
Q  214 ctttcaaaggtaacagccccaacatcgatccttacacacggcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatgg 313  Q
    ||||||  || |||||| ||||||||||||||| ||    | || ||| ||||||  ||||||||||||||||||||||||||||||| || ||| | ||    
T  10353851 ctttcaccggcaacagcaccaacatcgatcctttcaa---gggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacgg 10353755  T
Q  314 ccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccct 404  Q
    |  ||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||||||||    
T  10353754 cgtaatagctttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccct 10353664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 9321896 - 9321526
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaat 117  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||| || ||    
T  9321896 aaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgat 9321797  T
Q  118 ccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatga---taacgatttctctaatcgaatcaattcgattattccactcaaccatcc 214  Q
    || ||||||||| | |||| | |||| ||||||||||||||||||||||   | | |||||||||||    ||| ||  ||| |||||||||||||||||    
T  9321796 ccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaa----atccat--gatgattccactcaaccatcc 9321703  T
Q  215 tttcaaaggtaacagccccaacatcgatccttacacacggcgt-ga--cagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaat 311  Q
    |||||          | |||| |||  ||||  ||||||   | ||  ||| |||||||||||||||||||| ||||||||||||||||| |||||| |     
T  9321702 tttcac---------caccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatctcccac 9321612  T
Q  312 ggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttt 397  Q
    |||||| | |||||||  |||||||||  | ||||||||||||||||||||||||||| ||| ||||| ||||  || ||||||||    
T  9321611 ggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatcccttt 9321526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 9357856 - 9357723
Alignment:
Q  271 ctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaa 370  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |||    
T  9357856 ctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataa 9357757  T
Q  371 cacacgtaaacatctgattatcccttttctccct 404  Q
    ||  ||||||||||  ||||||||||| ||||||    
T  9357756 catccgtaaacatcacattatccctttcctccct 9357723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8572745 - 8572879
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||  |    
T  8572745 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgtt 8572844  T
Q  118 ccgtaatcattcgaaacaactccgatatctaccaa 152  Q
    || |||||||||||  ||||| |||||||||||||    
T  8572845 ccttaatcattcgacgcaactacgatatctaccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 9060343 - 9060508
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaa---aatcccctcaatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| | ||||||   |||||||||||||     
T  9060343 aatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcg 9060442  T
Q  116 atccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacgatttctctaa 181  Q
    ||   ||||| ||||| |||| |||||| |||||||||||||| |||||||| | |||||||||||    
T  9060443 atttataatccttcgacacaaatccgatctctaccaactccaagtcgatgatgatgatttctctaa 9060508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 254 - 404
Target Start/End: Complemental strand, 9275214 - 9275064
Alignment:
Q  254 gcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatc 353  Q
    |||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| ||| |||| ||||||| |||  || || |||||     
T  9275214 gcgtaacagcaccatggctcttataggttcatgtaacggcctcattgctatctccaatggccaaaccgccttcaggcatcctgacgatgcaaatgaaatt 9275115  T
Q  354 acaatctggaaccctaacacacgtaaacatctgattatcccttttctccct 404  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  9275114 acaatctggaaccctaacaccggtaaacatcggattatcccttttctccct 9275064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 9316708 - 9316578
Alignment:
Q  267 atggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaacc 366  Q
    ||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  9316708 atggctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaacc 9316609  T
Q  367 ctaacacacgtaaacatctgattatcccttt 397  Q
    ||||||| ||||||||||  |||||||||||    
T  9316608 ctaacacccgtaaacatcgtattatcccttt 9316578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 10372787 - 10372639
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaat 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||| ||||| ||||||||| ||    
T  10372787 aaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgat 10372688  T
Q  118 ccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatga 166  Q
    || ||||| ||| |  ||| | |||| ||||||||||||||||||||||    
T  10372687 ccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatga 10372639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 9292833 - 9292684
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaat 117  Q
    |||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||| |||||  |||||||| ||||||||| ||||||| | ||    
T  9292833 aaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgat 9292734  T
Q  118 ccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgat 167  Q
    || ||||| ||||| |||| | |||| |||||||||||||||||||||||    
T  9292733 ccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgat 9292684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 397
Target Start/End: Complemental strand, 9329292 - 9329149
Alignment:
Q  254 gcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatc 353  Q
    |||| |||||| ||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||| | | | ||||||| | |||||||||||    
T  9329292 gcgtaacagcaacatgggtcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatc 9329193  T
Q  354 acaatctggaaccctaacacacgtaaacatctgattatcccttt 397  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  9329192 acaatctggaaccctaacacccgtaaacatcgtattatcccttt 9329149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 232 - 404
Target Start/End: Original strand, 9283608 - 9283777
Alignment:
Q  232 ccaacatcgatccttacacacggcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgca 331  Q
    ||||||||||||||| |||   || | |||||| || ||||||||| ||||||||||||||||||||||| |||| |||||||| ||| ||||| |||||    
T  9283608 ccaacatcgatcctttcac---gcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacgca 9283704  T
Q  332 tcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccct 404  Q
    ||| |||| ||| |  |||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||    
T  9283705 tccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccct 9283777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 9316930 - 9316844
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9316930 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 10348458 - 10348325
Alignment:
Q  271 ctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaa 370  Q
    ||||||||||||||||||||||||||||||| |||||||  ||   ||||| ||||||||||||||||  |  |||||||||||||||||||||||||||    
T  10348458 ctcttatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaa 10348359  T
Q  371 cacacgtaaacatctgattatcccttttctccct 404  Q
    ||| ||||||||||  ||||||||||||||||||    
T  10348358 cacccgtaaacatcacattatcccttttctccct 10348325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 404
Target Start/End: Complemental strand, 9292609 - 9292471
Alignment:
Q  266 catggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaac 365  Q
    |||| ||||||| ||||||||||||||||||||||| || |||||| ||||||||   |||||||||||| ||||| | |||||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  366 cctaacacacgtaaacatctgattatcccttttctccct 404  Q
    |||||||| | |||||||| |||||||||||||||||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccct 9292471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 7115095 - 7115219
Alignment:
Q  260 cagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatc 359  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||   ||| |  ||||||||||||    
T  7115095 cagctccatggatcttatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatc 7115194  T
Q  360 tggaaccctaacacacgtaaacatc 384  Q
    |||||| ||||||| ||||||||||    
T  7115195 tggaacactaacacccgtaaacatc 7115219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 8572959 - 8573092
Alignment:
Q  271 ctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaa 370  Q
    ||||||||||||||||||||||||||||||| || || |||||   ||||||||| || || ||||| | ||||||| ||||| ||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaaccctaa 8573058  T
Q  371 cacacgtaaacatctgattatcccttttctccct 404  Q
    ||| ||||||||||  ||||||||||||||||||    
T  8573059 cacccgtaaacatcacattatcccttttctccct 8573092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 10336716 - 10336621
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaat 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||  ||||| ||||||||    
T  10336716 aaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 7114891 - 7114984
Alignment:
Q  20 atcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaat 113  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| || |||||    
T  7114891 atcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9275427 - 9275333
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaat 113  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||| ||||||||    
T  9275427 aatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 9358021 - 9357935
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 104  Q
    |||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  9358021 aaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 12011838 - 12011922
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaa 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||| ||||| ||||||||    
T  12011838 aatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 12005410 - 12005505
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatc 114  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||  ||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  12005410 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 9329504 - 9329418
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||  |||||||| |||||||||    
T  9329504 aaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 10348708 - 10348622
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||| || ||||||    
T  10348708 aaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 12018158 - 12018243
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaa 103  Q
    ||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||| ||||| ||||||||    
T  12018158 aaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  24 cttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaa 103  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| |||||| |||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 263 - 404
Target Start/End: Complemental strand, 10372545 - 10372404
Alignment:
Q  263 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 362  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  10372545 caccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 10372446  T
Q  363 aaccctaacacacgtaaacatctgattatcccttttctccct 404  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  10372445 aaccctaacacccgtaaacatagggttatcccttttctccct 10372404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 9283418 - 9283512
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaa 112  Q
    |||||||| |||||||||||||||||||| |||||||||  |||  |||| ||||||||||| |||||||||||||| ||||||| | |||||||    
T  9283418 aaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 404
Target Start/End: Complemental strand, 10336512 - 10336378
Alignment:
Q  270 gctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaacccta 369  Q
    |||||| | |||||||| || ||||||||||| |||||||||||| |||||||||||||  | ||| || ||||||| |||||| || |||| || ||||    
T  10336512 gctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatccta 10336413  T
Q  370 acacacgtaaacatctgattatcccttttctccct 404  Q
     ||  |||||||||| ||||||||||| |||||||    
T  10336412 ccatccgtaaacatcggattatcccttatctccct 10336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 14551215 - 14551091
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 126  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||| ||||| || |||||| ||||||||   ||| |||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  127 ttcgaaacaactccgatatctaccaa 152  Q
    ||||| |||| ||| || ||||||||    
T  14551116 ttcgacacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11986770 - 11986850
Alignment:
Q  19 aatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctca 99  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||  |||| |||||||||||||||| ||| ||||| ||||    
T  11986770 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 7612792 - 7612716
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaa 103  Q
    |||||||||||||||| ||| ||||| |||||||| ||||| ||||| ||||||||||  |||||||| ||||||||    
T  7612792 ctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 17565367 - 17565434
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttca 94  Q
    |||||| |||||||||| || ||||||||||||| |||||| ||||| || ||||||| |||||||||    
T  17565367 ctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttca 17565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 11987017 - 11987068
Alignment:
Q  344 caacgaaatcacaatctggaaccctaacacacgtaaacatctgattatccct 395  Q
    |||||||||| |  |||||||||||||||| |||||||||| ||||||||||    
T  11987017 caacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 12005657 - 12005716
Alignment:
Q  347 cgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccctat 406  Q
    |||||||||  |||||||||||||||  |||||||||| ||||||||||  |||||||||    
T  12005657 cgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctat 12005716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 9292665 - 9292637
Alignment:
Q  192 tcgattattccactcaaccatcctttcaa 220  Q
    |||||||||||||||||||||||||||||    
T  9292665 tcgattattccactcaaccatcctttcaa 9292637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 270 - 404
Target Start/End: Complemental strand, 5154 - 5020
Alignment:
Q  270 gctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaacccta 369  Q
    ||||||||||||||||||||||||||||||||  | ||||| ||| |||||||| |||  ||||||||||||||||||||||||||||||||||||||||    
T  5154 gctcttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaacccta 5055  T
Q  370 acacacgtaaacatctgattatcccttttctccct 404  Q
    |||  ||||||||||  ||||||||||||||||||    
T  5054 acatccgtaaacatcacattatcccttttctccct 5020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 5364 - 5269
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  5364 aaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaat 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 26575549 - 26575416
Alignment:
Q  271 ctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaa 370  Q
    ||||||||||||||||||||||||||||||| || ||| | |||  ||| |||||||||||||| |||||| ||||||||||| |||||||||||||| |    
T  26575549 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgcaatctggaaccctta 26575450  T
Q  371 cacacgtaaacatctgattatcccttttctccct 404  Q
    |||  ||||| ||| |||||||||||||||||||    
T  26575449 caccggtaaatatcggattatcccttttctccct 26575416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 26575782 - 26575622
Alignment:
Q  20 atcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||| |||||||||||||| |||| |||| ||| ||||| ||||    
T  26575782 atcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatcc 26575683  T
Q  120 gtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacgatttctctaatc 183  Q
     ||||| |||||  ||| | |||||||||||||||  ||||| |||||   |||||||||||||    
T  26575682 ttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgat---gatttctctaatc 26575622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 562066 - 561980
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaat 113  Q
    ||||||||||||| || ||||||||  ||||||||  |||||||||| ||||||||||  |||||||| ||||||||  ||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 41965966 - 41966079
Alignment:
Q  18 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaat 117  Q
    |||||| ||||||||||||||||||| || |||||||||  ||| ||||||||||| |||||||||||||||||||| |||| |||  ||||||||| ||    
T  41965966 aaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgat 41966065  T
Q  118 ccgtaatcattcga 131  Q
    || ||||| |||||    
T  41966066 ccttaatccttcga 41966079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 41966185 - 41966312
Alignment:
Q  279 ggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgta 378  Q
    |||||||||||||||||||||   |||||||||||| |||||| |||| |  | ||| ||| |   || ||||||||| |||||||||||||||   |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  379 aacatctgattatcccttttctccctat 406  Q
    |||||| |||||||||||||||||||||    
T  41966285 aacatcggattatcccttttctccctat 41966312  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 29452604 - 29452729
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 126  Q
    ||||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||  ||| |||||     
T  29452604 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatcc 29452703  T
Q  127 ttcgaaacaactccgatatctaccaa 152  Q
    ||||| ||||||| | | ||||||||    
T  29452704 ttcgacacaactctgttttctaccaa 29452729  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 29467078 - 29467203
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 126  Q
    ||||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||||||| ||||| |||  |||| |||||||||  | | |||||     
T  29467078 ctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatcc 29467177  T
Q  127 ttcgaaacaactccgatatctaccaa 152  Q
    ||||| ||||||||||| ||||||||    
T  29467178 ttcgacacaactccgatttctaccaa 29467203  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 29424110 - 29423985
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 126  Q
    ||||||||||| ||||| |||||||||||| ||||| |||||||||| |||| ||||||||| ||||| ||| | ||| || ||||||  ||| |||||     
T  29424110 ctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatcc 29424011  T
Q  127 ttcgaaacaactccgatatctaccaa 152  Q
    ||||| ||||||| ||| ||||||||    
T  29424010 ttcgacacaactctgatttctaccaa 29423985  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 29442612 - 29442737
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 126  Q
    ||||||||||| ||||| || ||||||||| ||||  |||||||||| || ||||||||||| ||||| ||| |||||  ||||||||  ||| |||||     
T  29442612 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 29442711  T
Q  127 ttcgaaacaactccgatatctaccaa 152  Q
    ||||| ||||||  ||| ||||||||    
T  29442712 ttcgacacaactttgatttctaccaa 29442737  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 36225646 - 36225571
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaa 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  || ||||| |||||||    
T  36225646 ctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 45238825 - 45238749
Alignment:
Q  27 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaa 103  Q
    ||||||||||||||||||||||| ||||||   ||||||||||||  | ||||||||| || |||||||||||||||    
T  45238825 ctccgattccgatcaacttcaaactcacttctttctttaatcgatagttacaacttcaccacccttcatctcaaaaa 45238749  T

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