View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_15 (Length: 406)
Name: NF19839_low_15
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_15 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 12446 - 12845
Alignment:
| Q |
1 |
catttgatcatatatatgtctgtggccgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12446 |
catttgatcatatatatgtctgtggc-gcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatc |
12544 |
T |
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| Q |
101 |
aataccggttctcaatctcatggtccagaatttttccaagtaattcaaatgtttctatatacatatttgatcaaaactagatgaaacaaatccatagctc |
200 |
Q |
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| T |
12545 |
aataccggttctcaatctcatggtccagaatttttccaagtaattcaaatgtttctatatacatatttgatcaaaactagatgaaacaaatccatagctc |
12644 |
T |
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| Q |
201 |
ccttaataattgattaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaa |
300 |
Q |
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| T |
12645 |
ccttaataattgattaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaa |
12744 |
T |
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| Q |
301 |
gggtaagtttttacgtagccatagtcgaaatag-----tagttttggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctat |
395 |
Q |
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| T |
12745 |
gggtaagtttttacgtagccatagtcgaaatagtaacatagtttaggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctat |
12844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 20183 - 20582
Alignment:
| Q |
1 |
catttgatcatatatatgtctgtggccgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatc |
100 |
Q |
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| T |
20183 |
catttgatcatatatatgtctgtggc-gcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatc |
20281 |
T |
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| Q |
101 |
aataccggttctcaatctcatggtccagaatttttccaagtaattcaaatgtttctatatacatatttgatcaaaactagatgaaacaaatccatagctc |
200 |
Q |
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| T |
20282 |
aataccggttctcaatctcatggtccagaatttttccaagtaattcaaatgtttctatatacatatttgatcaaaactagatgaaacaaatccatagctc |
20381 |
T |
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| Q |
201 |
ccttaataattgattaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaa |
300 |
Q |
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| T |
20382 |
ccttaataattgattaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaa |
20481 |
T |
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| Q |
301 |
gggtaagtttttacgtagccatagtcgaaatag-----tagttttggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctat |
395 |
Q |
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| T |
20482 |
gggtaagtttttacgtagccatagtcgaaatagtaacatagtttaggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctat |
20581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 29308 - 29701
Alignment:
| Q |
1 |
catttgatcatatatatgtctgtggccgcg--cgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttga |
98 |
Q |
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| T |
29308 |
catttgatcatatatatgtgtgtggccgcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttga |
29407 |
T |
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| Q |
99 |
tcaataccggttctcaatctcatggtccagaatttttccaagtaattcaaatgtttc--tatatacatatttgatcaaaactagatgaaacaaatccata |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||| |
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| T |
29408 |
tcaataccggttctcaatctcatggtccagaatttttccaagtaattcaaatatttctatatatacatatttgatcaaaacaagatgtagaaaatcca-- |
29505 |
T |
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| Q |
197 |
gctcccttaataattga--ttaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttact |
294 |
Q |
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|||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
29506 |
------ttaataatcaattttaaactattgatgcagatggaactggcaaagtaaattggaaaggtgtagcgtactacaacagattgatcgattacttgct |
29599 |
T |
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| Q |
295 |
agaaaagggtaagtttttacgtagccatagtcgaaata-----gtagttttggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaa |
389 |
Q |
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| T |
29600 |
agaaaagggtaattttttatgtatccctagtcgaaatactaacatagttttggaaatgtaatgtt-aattttaatcgctcgttgtgtttttgttccttaa |
29698 |
T |
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