View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_16 (Length: 403)
Name: NF19839_low_16
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 3029494 - 3029862
Alignment:
| Q |
6 |
gaagaaaataatcatgaggtgaatatattaaaggaaatctggtgcatgtcgacacttgagacttctagcttacgata-gcataactatttccagatttca |
104 |
Q |
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| T |
3029494 |
gaagaaaataatcatgaggtgaatatattaatggaaatctggtgtatatcgacacttgagacttctagctcacgataagcataactatttccagatttca |
3029593 |
T |
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| Q |
105 |
tcatgagtaatttaatgtagttttcatttgtcaaaattgtaaaactgttggacaaaatcagaatacaactccaatatatagtcactacgtatatggtagc |
204 |
Q |
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| T |
3029594 |
tcatgagtaatttaacgtagttttcatttctcaaa-ttgtaaaactgttggacgaaatcagaacacaactccaatatatagtcactacgtatatggtagc |
3029692 |
T |
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| Q |
205 |
ctgttgttccgtaattgaggctattacagggatcatggcaataatgaagtcagagaaaatacagattttgagatatgatgagcttaatctagaatttcac |
304 |
Q |
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|||||||||||||||||||||||| || |||||||| |||| |||||||||| | |||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
3029693 |
ctgttgttccgtaattgaggctatcacggggatcatagcaagaatgaagtcacataaaatattgattttgagatatgatgagcttaatctagactttcat |
3029792 |
T |
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| Q |
305 |
ttgatctgttgatt-aaaagaa-ctagtagcagaatctttaatgtttaaaacatttgcttattagttggt |
372 |
Q |
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| T |
3029793 |
ttgatctgttgattaaaaagaatttaggagcagaatgatttatgtttaacacatttgtttattagttggt |
3029862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 45 - 288
Target Start/End: Complemental strand, 22651679 - 22651438
Alignment:
| Q |
45 |
tggtgcatgtcgacacttgagacttctagcttacgata-gcataactatttccagatttcatcatgagtaatttaatgtagttttcatttgtcaaaattg |
143 |
Q |
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| T |
22651679 |
tggtgtatatcgacacttgagacttctagcttacaataagcataactatttccagattttatcatgagtaatttaatgtagttttcatttctcaaa-ttg |
22651581 |
T |
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| Q |
144 |
taaaactgttggacaaaatcagaatacaactccaatatatagtcactacgtatatggtagcctgttgttccgtaattgaggctattacagggatcatggc |
243 |
Q |
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| T |
22651580 |
gaaaactgttggacgaaatcagaatacaactctaatatatagtcactacgtatatggtagcctgttgttccgtaattaaggctattgcgccgatcatgac |
22651481 |
T |
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| Q |
244 |
aataatgaagtcagagaaaatacagattttgagatatgatgagct |
288 |
Q |
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| T |
22651480 |
aataataaagtc--agaaaatattgattttgagatatgatgagct |
22651438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 9817067 - 9817151
Alignment:
| Q |
235 |
gatcatggcaataatgaagtcagagaaaatacagattttgagatatgatgagcttaatctagaatttcacttgatctgttgatta |
319 |
Q |
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| T |
9817067 |
gatcatggcaatattgaagtcagtgaaaatattgattttgagatatgaagagcttaatctagagtatcacttgatctgttgatta |
9817151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 19953167 - 19953257
Alignment:
| Q |
112 |
taatttaatgtagttttcatttgtcaaaattgtaaaactgttggacaaaatcagaatacaactccaatatatagtcactacgtatatggtagc |
204 |
Q |
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| T |
19953167 |
taatttaatgtagctttcattt--cacaactcttaaacggttggacaaaatcagaatacaactccaatatataatcactatgtatatggtagc |
19953257 |
T |
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