View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_18 (Length: 401)
Name: NF19839_low_18
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 18813256 - 18813430
Alignment:
| Q |
144 |
tttcatatattttatgaactaaatcggatagtttaggaactaaattgatgatttattcttcatctcatcgtttgagctaattttggacatatatattaaa |
243 |
Q |
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| T |
18813256 |
tttcatatgctttttgaactaaatcggatagtttagggactaaattgatgatttattcttcatctcatcctttgagctaattttggacatatatattaaa |
18813355 |
T |
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| Q |
244 |
caatttgtttgtgatttattaataggttttgggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
318 |
Q |
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| T |
18813356 |
caatttgtttgtgatttattaataggttttgggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
18813430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 18812828 - 18812926
Alignment:
| Q |
47 |
agaacctttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttaattacatacaaattttctt |
145 |
Q |
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| T |
18812828 |
agaacatttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttacttacatacaaattttctt |
18812926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 18813951 - 18814032
Alignment:
| Q |
314 |
gaactgattaacctaaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttcttctctct |
395 |
Q |
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| T |
18813951 |
gaactgattaacctgaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttcttttctct |
18814032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 48249675 - 48249511
Alignment:
| Q |
155 |
ttatgaactaaatcggatagtttaggaactaaattgatgatttattcttca-tctcatcgtttgagctaattttggacatatatattaaacaatttgttt |
253 |
Q |
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| T |
48249675 |
ttatgaactaaataggatagtttagggactaaattgatgatttattctttaatctcaccctttgagctaattttggacatatatattaa-caatttgttt |
48249577 |
T |
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| Q |
254 |
gtgattt-attaataggttttgggaaacaacataaagaaggagttgtcaagaatccaggcagaact |
318 |
Q |
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| T |
48249576 |
gtgattttattaataggttttgggaaacaacataaagaaggagttgtcaagaatccagacagaact |
48249511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 48248971 - 48248896
Alignment:
| Q |
314 |
gaactgattaacctaaggtctatatcagcttcttcctctaagaaactaattaagctgaggtctctaccatcttctt |
389 |
Q |
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| T |
48248971 |
gaactgattaagctgaggtccatatcagcttcttcctctaagaaactaattaagctgaggtctctatcagcttctt |
48248896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 40442016 - 40442133
Alignment:
| Q |
28 |
tctctgcaatctgcgttatagaacctttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttaa |
127 |
Q |
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|||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
40442016 |
tctctgcattctgcattatagaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatctttac |
40442115 |
T |
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| Q |
128 |
ttacatacaaattttctt |
145 |
Q |
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| T |
40442116 |
ttgcgtacaaattttctt |
40442133 |
T |
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