View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_24 (Length: 370)

Name: NF19839_low_24
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_24
NF19839_low_24
[»] chr4 (12 HSPs)
chr4 (220-330)||(24846922-24847032)
chr4 (1-205)||(24846664-24846866)
chr4 (101-146)||(56049900-56049945)
chr4 (51-146)||(40224438-40224533)
chr4 (66-143)||(16073421-16073498)
chr4 (50-144)||(21345472-21345566)
chr4 (107-144)||(33950162-33950199)
chr4 (97-140)||(20950413-20950456)
chr4 (104-142)||(16066558-16066596)
chr4 (113-146)||(18513243-18513276)
chr4 (90-146)||(13307901-13307957)
chr4 (90-146)||(21945527-21945583)
[»] chr1 (6 HSPs)
chr1 (56-146)||(33202927-33203017)
chr1 (58-146)||(19637792-19637880)
chr1 (66-144)||(40258888-40258966)
chr1 (51-144)||(38078601-38078694)
chr1 (113-146)||(30847722-30847755)
chr1 (112-144)||(20157351-20157383)
[»] chr8 (8 HSPs)
chr8 (67-145)||(44462151-44462229)
chr8 (67-145)||(44469684-44469762)
chr8 (51-123)||(9945299-9945371)
chr8 (102-145)||(5138823-5138866)
chr8 (66-141)||(8293854-8293929)
chr8 (107-142)||(12606825-12606860)
chr8 (111-146)||(31548293-31548328)
chr8 (107-144)||(12985418-12985455)
[»] chr6 (10 HSPs)
chr6 (51-142)||(13364645-13364736)
chr6 (90-146)||(6751862-6751917)
chr6 (99-143)||(18612648-18612692)
chr6 (90-144)||(7265572-7265626)
chr6 (112-146)||(9024177-9024211)
chr6 (112-146)||(32980982-32981016)
chr6 (107-144)||(7378005-7378042)
chr6 (97-146)||(26402666-26402715)
chr6 (112-144)||(9617460-9617492)
chr6 (112-144)||(9629409-9629441)
[»] chr2 (10 HSPs)
chr2 (63-146)||(18570996-18571079)
chr2 (90-146)||(43585984-43586040)
chr2 (56-143)||(12224250-12224337)
chr2 (66-144)||(2438674-2438752)
chr2 (112-146)||(31026719-31026753)
chr2 (112-146)||(37402085-37402119)
chr2 (112-146)||(45000847-45000881)
chr2 (113-146)||(14373429-14373462)
chr2 (51-144)||(20242667-20242760)
chr2 (112-144)||(18889592-18889624)
[»] chr3 (10 HSPs)
chr3 (66-144)||(40993290-40993368)
chr3 (65-144)||(10954978-10955057)
chr3 (107-146)||(20691343-20691382)
chr3 (90-144)||(35222964-35223018)
chr3 (105-142)||(40150565-40150602)
chr3 (90-146)||(20141120-20141175)
chr3 (112-146)||(27513663-27513697)
chr3 (113-146)||(23271996-23272029)
chr3 (66-146)||(20503489-20503569)
chr3 (66-122)||(28812574-28812630)
[»] chr7 (11 HSPs)
chr7 (51-146)||(3652250-3652343)
chr7 (90-146)||(25956469-25956525)
chr7 (104-144)||(5835273-5835313)
chr7 (91-143)||(22484052-22484104)
chr7 (115-146)||(38134410-38134441)
chr7 (112-146)||(2525845-2525879)
chr7 (70-144)||(21880178-21880252)
chr7 (113-142)||(3142080-3142109)
chr7 (101-146)||(7546184-7546229)
chr7 (111-144)||(17257989-17258022)
chr7 (90-146)||(5937400-5937456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (111-142)||(240021-240052)
[»] chr5 (10 HSPs)
chr5 (101-144)||(18145293-18145336)
chr5 (112-146)||(32444790-32444824)
chr5 (90-123)||(2321981-2322014)
chr5 (113-146)||(14818305-14818338)
chr5 (68-141)||(30502345-30502418)
chr5 (68-141)||(30542688-30542761)
chr5 (110-146)||(10009850-10009886)
chr5 (51-146)||(11596398-11596490)
chr5 (112-144)||(17925173-17925205)
chr5 (96-144)||(42029778-42029826)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 24846922 - 24847032
Alignment:
Q  220 taatgaatataatatatgtatcaatagctactgttcaatattactgtatgccataaagtattaagaatcacaagtgtacaacttctttactttgcttctc 319  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  24846922 taatgaatataatgtatgtatcaatagctactattcaatattactgtattccataaagtattaagaatcacaagtatacaacttctttactttccttctc 24847021  T
Q  320 atcaattactt 330  Q
     | ||||||||    
T  24847022 tttaattactt 24847032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24846664 - 24846866
Alignment:
Q  1 tctaatacattataccggtgtataggc---actagaccgtattcaatcaaaggctattaagcacat-atactcctcggagtaggcgtgacctagtgtctg 96  Q
    |||||||||||||||| |||||||||    ||||||| ||||||||||||  | | | |||||||  |||||||||||||| ||||||||| |||||  |    
T  24846664 tctaatacattataccagtgtataggtggtactagacggtattcaatcaagcgttgtgaagcacaagatactcctcggagttggcgtgacccagtgttag 24846763  T
Q  97 acatgtatcatgtctgacaccgacacatatgattacattgaattatgtcannnnnnnatattattatcagtttcaatgtgtttgtattcgtgtcgtgtct 196  Q
    | | ||||||||||||| |||| ||||||||| |||| ||||||||||||       | |||||||||||||||||       ||||||||||||||||     
T  24846764 atacgtatcatgtctgataccgtcacatatgagtacagtgaattatgtcatttgctcaaattattatcagtttcaa------cgtattcgtgtcgtgtcc 24846857  T
Q  197 ggtgtccat 205  Q
    |||||||||    
T  24846858 ggtgtccat 24846866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 56049945 - 56049900
Alignment:
Q  101 gtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  56049945 gtatcatgtctgacaccgacacatatgattacattgaactatgtca 56049900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 40224438 - 40224533
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||| ||||||| |||||||||||| ||| |||| || | |||| || |  |||||||||  ||||||||||||||||||||||| ||||||||||    
T  40224438 ctatgaagcacacatactcctcggattagacgtgtcccaatgtcggaaacatatcatgtccaacaccgacacatatgattacattaaattatgtca 40224533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 16073498 - 16073421
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatg 143  Q
    |||||||||| |||||||| | ||||||| |||||||||| |||| ||||||||||| | | |||||| |||||||||    
T  16073498 actcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaattatg 16073421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 21345472 - 21345566
Alignment:
Q  50 gctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||| ||||||| |||||||||||| ||||| ||  |  ||||  || ||||||| ||||||||||||||| | ||||||||||||| ||||||    
T  21345472 gctatgaagcacacatactcctcggattaggcatgtaccggtgttggatatgtatcgtgtctgacaccgacataaatgattacattgagttatgt 21345566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 33950199 - 33950162
Alignment:
Q  107 tgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  33950199 tgtctgacaccgacacatatgattacattaaattatgt 33950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 20950413 - 20950456
Alignment:
Q  97 acatgtatcatgtctgacaccgacacatatgattacattgaatt 140  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  20950413 acatgtatcgtgtctgacaccgacacatataattacactgaatt 20950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 16066558 - 16066596
Alignment:
Q  104 tcatgtctgacaccgacacatatgattacattgaattat 142  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  16066558 tcatgtctgacatcgacacatataattacattgaattat 16066596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 18513243 - 18513276
Alignment:
Q  113 acaccgacacatatgattacattgaattatgtca 146  Q
    |||| |||||||||||||||||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtca 18513276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 13307957 - 13307901
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||| || || |||| |||||| |||| | |||||||||||||||||||||    
T  13307957 gtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtca 13307901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 21945583 - 21945527
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| ||||||| ||||||| ||||||||||| | | |||||| ||||||||||||    
T  21945583 gtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtca 21945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 33203017 - 33202927
Alignment:
Q  56 aagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||||||||| |||||||| |   ||||| || ||||||| ||||||||||| | ||||||||||||||||| ||||||||    
T  33203017 aagcacatatactcctcggattaggcgtgtcacggtgtcggatatgtatcgtgtctgacaccaaaacatatgattacattgatttatgtca 33202927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 19637880 - 19637792
Alignment:
Q  58 gcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| |||||||||||| |||| | | ||  ||||| || ||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  19637880 gcacaaatactcctcggattaggggcgtcccggtgtcggatatgtatcgtgtccgacaccgacacatatgattacattgaataatgtca 19637792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 40258888 - 40258966
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||| |||||||| ||| ||||| |||| || || |||||||||||||||| | | |||||| ||||||||||    
T  40258888 actcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgt 40258966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 38078601 - 38078694
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||| ||||||  |||||||||||| |||||||| ||| ||||   |||||| || |||| ||||||||||| | | |||||||||||||||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgt 38078694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 30847722 - 30847755
Alignment:
Q  113 acaccgacacatatgattacattgaattatgtca 146  Q
    |||| |||||||||||||||||||||||||||||    
T  30847722 acactgacacatatgattacattgaattatgtca 30847755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 20157351 - 20157383
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||||||||||||||| ||||||||||    
T  20157351 gacaccgacacatatgattacactgaattatgt 20157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 44462151 - 44462229
Alignment:
Q  67 ctcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtc 145  Q
    ||||||||| ||| |||| ||  ||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  44462151 ctcctcggattagacgtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtc 44462229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 44469684 - 44469762
Alignment:
Q  67 ctcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtc 145  Q
    ||||||||| ||| |||| ||  ||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  44469684 ctcctcggattagacgtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtc 44469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 9945371 - 9945299
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacaca 123  Q
    |||| ||||| |||||||| |||||  ||||||  ||| ||||| || |||||||||||||||||||||||||    
T  9945371 ctatgaagcaaatatactcttcggataaggcgtctcctggtgtcggatatgtatcatgtctgacaccgacaca 9945299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 5138823 - 5138866
Alignment:
Q  102 tatcatgtctgacaccgacacatatgattacattgaattatgtc 145  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||    
T  5138823 tatcatgttcgacaccggcacatatgattacattgaattatgtc 5138866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 8293929 - 8293854
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaatta 141  Q
    |||||||||| |||| ||| ||  ||||| || |||| |||||| |||||||||||||||| |||||| |||||||    
T  8293929 actcctcggattaggtgtgtccaggtgtcagatatgtgtcatgtttgacaccgacacatataattacactgaatta 8293854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 12606825 - 12606860
Alignment:
Q  107 tgtctgacaccgacacatatgattacattgaattat 142  Q
    |||||||||||||||||||| |||||||||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattat 12606860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 31548293 - 31548328
Alignment:
Q  111 tgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||| |||||||||||||||||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtca 31548328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 12985455 - 12985418
Alignment:
Q  107 tgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  12985455 tgtccgacaccgacatatatgattacattgaattatgt 12985418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 13364645 - 13364736
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattat 142  Q
    |||| ||||||| | |||| ||||| ||| |||| ||| ||||| |||||||||| ||||  ||||||||||||||||||||| ||||||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatcgtgtccaacaccgacacatatgattacactgaattat 13364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 6751862 - 6751917
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||    
T  6751862 gtgtctgacatgtat-atgtccgacaccgacacttgtgattacattgaattatgtca 6751917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 18612692 - 18612648
Alignment:
Q  99 atgtatcatgtctgacaccgacacatatgattacattgaattatg 143  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||    
T  18612692 atgtatcgtatctgacaccaacacatatgattacattgaattatg 18612648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 7265572 - 7265626
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||| |||||||||  |||| ||||||||||||||| |||||| ||||||||||    
T  7265572 gtgtcggacatgtattgtgtccgacaccgacacatataattacactgaattatgt 7265626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 9024177 - 9024211
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| |||||||||||||||||||||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtca 9024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 32981016 - 32980982
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||||||||| ||||||||||||||    
T  32981016 gacaccgacacatatgattatattgaattatgtca 32980982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 7378042 - 7378005
Alignment:
Q  107 tgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  7378042 tgtccgacaccgacacatataattacattgaattatgt 7378005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 26402666 - 26402715
Alignment:
Q  97 acatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||| |||| ||||||||||| | |||||||| ||||||||||||    
T  26402666 acatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtca 26402715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 9617492 - 9617460
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||||||| |||||||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgt 9617460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 9629441 - 9629409
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||||||| |||||||||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgt 9629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 18571079 - 18570996
Alignment:
Q  63 tatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||| || || |||||||| ||| ||||| || ||||||| |||  ||||| |||||||||||||||||||||||||||||    
T  18571079 tatactcttcagattaggcgtgtcctggtgtcggatatgtatcgtgttcgacactgacacatatgattacattgaattatgtca 18570996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 43585984 - 43586040
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||    
T  43585984 gtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtca 43586040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 12224337 - 12224250
Alignment:
Q  56 aagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatg 143  Q
    ||||||| | |||||| ||| |||||||| || |||||| |||| ||||| |||| ||||||||||| | | ||||||||| ||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattggattatg 12224250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 2438674 - 2438752
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||| |||||||| ||  ||||| ||||||| || |||| ||||||||||| | | |||||| ||||||||||    
T  2438674 actcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 2438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 31026753 - 31026719
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||| ||||||||||||||||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtca 31026719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 37402085 - 37402119
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| |||||||||||||||||||||||||||||    
T  37402085 gacactgacacatatgattacattgaattatgtca 37402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 45000847 - 45000881
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||||||||||||||||| |||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtca 45000881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 14373429 - 14373462
Alignment:
Q  113 acaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||| |||||||||||||||||||||    
T  14373429 acaccgacacatgtgattacattgaattatgtca 14373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 20242667 - 20242760
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||| ||||||| | |||| |||||  ||||||| ||| ||||| |||| || |  |||| ||||||||||||||| |||||| ||||||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgt 20242760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 18889592 - 18889624
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||||||||||||||| ||||||||||    
T  18889592 gacaccgacacatatgattacactgaattatgt 18889624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 40993290 - 40993368
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||| |||||||| ||  ||||| ||||||| || |||| ||||||||||||||| |||||| ||||||||||    
T  40993290 actcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgt 40993368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 10955057 - 10954978
Alignment:
Q  65 tactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||| |||||||| || |||||| |||| || || |||| ||||||||||| | |||||||| ||||||||||    
T  10955057 tactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgt 10954978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 20691382 - 20691343
Alignment:
Q  107 tgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  20691382 tgtctgacaccgacacatatgattacactgaattatgtca 20691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 35223018 - 35222964
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||| |||| || ||||||| ||||||||||||||| |||||||||||||||||    
T  35223018 gtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgt 35222964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 40150565 - 40150602
Alignment:
Q  105 catgtctgacaccgacacatatgattacattgaattat 142  Q
    |||||| |||||||||||||||||||||||||||||||    
T  40150565 catgtcagacaccgacacatatgattacattgaattat 40150602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 20141175 - 20141120
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| || ||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  20141175 gtgtcagatatgtatcgtgtctgacac-gacacatatgattacattcaattatgtca 20141120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 27513663 - 27513697
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||||||||||||||||| ||||||    
T  27513663 gacaccgacacatatgattacattgaataatgtca 27513697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 23271996 - 23272029
Alignment:
Q  113 acaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||||||||||| ||||||||||    
T  23271996 acaccgacacatatgattacattcaattatgtca 23272029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 20503569 - 20503489
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||| |||||||| ||  ||||| ||||||| || ||||  |||||||||| | | |||||| ||||||||||||    
T  20503569 actcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtca 20503489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 28812630 - 28812574
Alignment:
Q  66 actcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacac 122  Q
    |||||||||| |||||||| |||  |||| |||||||||| ||||||||||| ||||    
T  28812630 actcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacaccaacac 28812574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 3652250 - 3652343
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||| |||||||||||| ||||||| |||| ||| || |||||| ||  || ||  ||||||||||||||||||  ||||||||||||||||||||    
T  3652250 ctatgaagcacatatacccctcggattaggtgtgtccaagtgtcggatttgcattgtgtctgacaccgacacat--gattacattgaattatgtca 3652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 25956525 - 25956469
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| |||||||||| |||| ||||||||||| | |||||||||||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtca 25956469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 5835313 - 5835273
Alignment:
Q  104 tcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  5835313 tcatgtctgacaccgacacatataattacactgaattatgt 5835273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 22484104 - 22484052
Alignment:
Q  91 tgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatg 143  Q
    |||| ||||||| ||||||||||||||||||||||| |||| | |||||||||    
T  22484104 tgtcggacatgtgtcatgtctgacaccgacacatataattatactgaattatg 22484052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 38134410 - 38134441
Alignment:
Q  115 accgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||||||||||||||||||||    
T  38134410 accgacacatatgattacattgaattatgtca 38134441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 2525845 - 2525879
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||||||||||||| ||||||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtca 2525879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 21880252 - 21880178
Alignment:
Q  70 ctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    |||||| |||||||| ||| ||||| ||||||| || |||| ||||||||||| | | |||||| ||||||||||    
T  21880252 ctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 21880178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 3142080 - 3142109
Alignment:
Q  113 acaccgacacatatgattacattgaattat 142  Q
    ||||||||||||||||||||||||||||||    
T  3142080 acaccgacacatatgattacattgaattat 3142109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 7546229 - 7546184
Alignment:
Q  101 gtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||||||| |||||| || |||||||| ||||||||||||||||    
T  7546229 gtatcatgtccgacaccaacccatatgatcacattgaattatgtca 7546184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 17257989 - 17258022
Alignment:
Q  111 tgacaccgacacatatgattacattgaattatgt 144  Q
    |||||||||||| |||||||||||||||||||||    
T  17257989 tgacaccgacacttatgattacattgaattatgt 17258022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 5937400 - 5937456
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    ||||| |||||||||| || | ||||| ||||| | |||||||||||||||||||||    
T  5937400 gtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtca 5937456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 240021 - 240052
Alignment:
Q  111 tgacaccgacacatatgattacattgaattat 142  Q
    ||||||||||||||||||||||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattat 240052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 18145293 - 18145336
Alignment:
Q  101 gtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  18145293 gtatcgtgtttgacaccaacacatatgattacattgaattatgt 18145336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 32444824 - 32444790
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||| |||||||||||||||||||||    
T  32444824 gacaccgacacatttgattacattgaattatgtca 32444790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 2322014 - 2321981
Alignment:
Q  90 gtgtctgacatgtatcatgtctgacaccgacaca 123  Q
    ||||| ||||||||||||||||||||||||||||    
T  2322014 gtgtcggacatgtatcatgtctgacaccgacaca 2321981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 14818305 - 14818338
Alignment:
Q  113 acaccgacacatatgattacattgaattatgtca 146  Q
    ||||||||||||||| ||||||||||||||||||    
T  14818305 acaccgacacatatgtttacattgaattatgtca 14818338  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 30502345 - 30502418
Alignment:
Q  68 tcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaatta 141  Q
    |||| ||| ||||| || || |||||| ||||||| || |||| ||||||||||||||| |||||| |||||||    
T  30502345 tccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatta 30502418  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 30542688 - 30542761
Alignment:
Q  68 tcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaatta 141  Q
    |||| ||| ||||| || || |||||| ||||||| || |||| ||||||||||||||| |||||| |||||||    
T  30542688 tccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatta 30542761  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 10009886 - 10009850
Alignment:
Q  110 ctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||||| |||||||| |||||||||||||||||||||    
T  10009886 ctgacaacgacacatgtgattacattgaattatgtca 10009850  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 11596398 - 11596490
Alignment:
Q  51 ctattaagcacatatactcctcggagtaggcgtgacctagtgtctgacatgtatcatgtctgacaccgacacatatgattacattgaattatgtca 146  Q
    |||| ||||||| |||||||||||| |||||||| || |||||| || |  |||| ||||  |||||||| |  ||||||||||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattaggcgtgtcc-agtgtcagatacatatcgtgtccaacaccgacgc--atgattacattgaattatgtca 11596490  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 17925173 - 17925205
Alignment:
Q  112 gacaccgacacatatgattacattgaattatgt 144  Q
    ||||||||||||||| |||||||||||||||||    
T  17925173 gacaccgacacatattattacattgaattatgt 17925205  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 42029826 - 42029778
Alignment:
Q  96 gacatgtatcatgtctgacaccgacacatatgattacattgaattatgt 144  Q
    ||||||| || |||| |||||||| |||||| |||||||||||||||||    
T  42029826 gacatgtgtcgtgtccgacaccgatacatataattacattgaattatgt 42029778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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