View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_25 (Length: 368)

Name: NF19839_low_25
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_25
NF19839_low_25
[»] chr5 (30 HSPs)
chr5 (172-266)||(14169139-14169230)
chr5 (172-266)||(14169324-14169415)
chr5 (292-353)||(13042590-13042651)
chr5 (262-358)||(41340325-41340419)
chr5 (289-357)||(34103601-34103669)
chr5 (282-358)||(41341501-41341577)
chr5 (290-336)||(41170702-41170748)
chr5 (292-353)||(13112588-13112649)
chr5 (282-358)||(5963729-5963805)
chr5 (292-336)||(6500890-6500934)
chr5 (292-336)||(26074680-26074724)
chr5 (297-336)||(18603171-18603210)
chr5 (297-336)||(32487461-32487500)
chr5 (301-358)||(14168980-14169037)
chr5 (292-336)||(9498700-9498744)
chr5 (292-336)||(26074192-26074236)
chr5 (292-336)||(40296361-40296405)
chr5 (292-331)||(6500523-6500562)
chr5 (297-336)||(29549306-29549345)
chr5 (297-336)||(34753076-34753115)
chr5 (297-336)||(36521947-36521986)
chr5 (292-334)||(33747841-33747883)
chr5 (297-334)||(11417028-11417065)
chr5 (297-338)||(24489257-24489298)
chr5 (307-336)||(26075223-26075252)
chr5 (297-334)||(36527146-36527183)
chr5 (292-336)||(624264-624308)
chr5 (294-338)||(2411073-2411117)
chr5 (292-336)||(3295061-3295105)
chr5 (292-336)||(25328003-25328047)
[»] chr7 (30 HSPs)
chr7 (262-358)||(48071432-48071526)
chr7 (282-362)||(27391805-27391885)
chr7 (290-338)||(1085292-1085340)
chr7 (292-336)||(7517648-7517692)
chr7 (292-336)||(11845259-11845303)
chr7 (297-336)||(1085667-1085706)
chr7 (297-336)||(22566713-22566752)
chr7 (292-354)||(21416187-21416249)
chr7 (297-335)||(23569053-23569091)
chr7 (292-338)||(30253558-30253604)
chr7 (262-358)||(8802250-8802344)
chr7 (262-358)||(8802546-8802640)
chr7 (292-333)||(30244341-30244382)
chr7 (292-336)||(23423-23467)
chr7 (292-336)||(6054628-6054672)
chr7 (292-336)||(29157633-29157677)
chr7 (292-336)||(30245145-30245189)
chr7 (292-336)||(37533410-37533454)
chr7 (292-335)||(14681579-14681622)
chr7 (292-334)||(7554095-7554137)
chr7 (298-336)||(16569264-16569302)
chr7 (298-336)||(16596360-16596398)
chr7 (297-335)||(28300304-28300342)
chr7 (290-336)||(36939777-36939823)
chr7 (292-333)||(19122802-19122843)
chr7 (292-333)||(34218080-34218121)
chr7 (292-333)||(45754786-45754827)
chr7 (292-336)||(8128487-8128531)
chr7 (292-336)||(21619091-21619135)
chr7 (292-336)||(22567085-22567129)
[»] chr6 (24 HSPs)
chr6 (289-358)||(21130100-21130169)
chr6 (262-358)||(22605038-22605132)
chr6 (262-358)||(22605273-22605367)
chr6 (292-336)||(1846816-1846860)
chr6 (292-336)||(2377822-2377866)
chr6 (297-336)||(16454643-16454682)
chr6 (292-334)||(3058296-3058338)
chr6 (290-336)||(35210272-35210318)
chr6 (292-333)||(16107749-16107790)
chr6 (292-336)||(2578489-2578533)
chr6 (292-336)||(3409327-3409371)
chr6 (292-336)||(3415526-3415570)
chr6 (292-336)||(10074037-10074081)
chr6 (292-336)||(10074409-10074453)
chr6 (292-336)||(11637767-11637811)
chr6 (292-336)||(29518571-29518615)
chr6 (292-336)||(29518988-29519032)
chr6 (297-333)||(32460631-32460667)
chr6 (292-336)||(32741247-32741291)
chr6 (297-336)||(16454975-16455014)
chr6 (297-335)||(2843624-2843662)
chr6 (297-334)||(6071202-6071239)
chr6 (297-334)||(6999847-6999884)
chr6 (297-333)||(1127431-1127467)
[»] chr3 (35 HSPs)
chr3 (291-358)||(17731949-17732016)
chr3 (291-358)||(19033180-19033247)
chr3 (292-363)||(54017594-54017665)
chr3 (282-358)||(16870995-16871071)
chr3 (282-358)||(17735027-17735103)
chr3 (282-358)||(19036296-19036372)
chr3 (292-336)||(22304001-22304045)
chr3 (290-336)||(22303703-22303749)
chr3 (292-335)||(3135500-3135543)
chr3 (297-336)||(52634743-52634782)
chr3 (298-336)||(32589771-32589809)
chr3 (292-338)||(43346837-43346883)
chr3 (282-339)||(16868419-16868476)
chr3 (297-338)||(29644632-29644673)
chr3 (292-353)||(48127861-48127922)
chr3 (292-336)||(12114608-12114652)
chr3 (292-336)||(15772922-15772966)
chr3 (292-336)||(22304637-22304681)
chr3 (292-336)||(39389138-39389182)
chr3 (282-341)||(16869833-16869892)
chr3 (297-336)||(29644953-29644992)
chr3 (301-336)||(41359820-41359855)
chr3 (297-336)||(47964569-47964608)
chr3 (298-336)||(1634366-1634404)
chr3 (292-330)||(53118021-53118059)
chr3 (292-354)||(53596010-53596072)
chr3 (292-354)||(53596325-53596387)
chr3 (291-336)||(16143506-16143551)
chr3 (297-334)||(32462609-32462646)
chr3 (292-333)||(32462946-32462987)
chr3 (292-333)||(37990685-37990726)
chr3 (297-334)||(46546376-46546413)
chr3 (292-336)||(4823723-4823767)
chr3 (292-336)||(35946590-35946634)
chr3 (297-333)||(42342141-42342177)
[»] chr4 (28 HSPs)
chr4 (297-353)||(1868102-1868158)
chr4 (297-336)||(22183313-22183352)
chr4 (297-354)||(10396466-10396523)
chr4 (292-336)||(41370425-41370469)
chr4 (292-336)||(49302974-49303018)
chr4 (292-336)||(50630799-50630843)
chr4 (292-336)||(54936264-54936308)
chr4 (290-336)||(1731689-1731735)
chr4 (292-354)||(11197276-11197338)
chr4 (292-334)||(25483406-25483448)
chr4 (297-335)||(44620422-44620460)
chr4 (297-338)||(3271853-3271894)
chr4 (292-336)||(3340875-3340919)
chr4 (297-333)||(4955366-4955402)
chr4 (292-336)||(18932793-18932837)
chr4 (292-336)||(36629305-36629349)
chr4 (292-336)||(55933168-55933212)
chr4 (297-336)||(31691220-31691259)
chr4 (289-352)||(51681590-51681653)
chr4 (297-336)||(54017644-54017683)
chr4 (292-333)||(23817725-23817766)
chr4 (292-333)||(34646693-34646734)
chr4 (292-336)||(922486-922530)
chr4 (297-333)||(15841417-15841453)
chr4 (297-333)||(32941172-32941208)
chr4 (300-336)||(49880228-49880264)
chr4 (292-336)||(50002494-50002538)
chr4 (292-336)||(54108981-54109024)
[»] chr2 (23 HSPs)
chr2 (297-336)||(29874074-29874113)
chr2 (297-341)||(36178222-36178266)
chr2 (292-336)||(36178651-36178695)
chr2 (290-338)||(37895105-37895153)
chr2 (297-336)||(14745345-14745384)
chr2 (297-336)||(14745718-14745757)
chr2 (297-336)||(15880331-15880370)
chr2 (290-336)||(37106256-37106302)
chr2 (292-336)||(6421799-6421843)
chr2 (292-336)||(28254283-28254327)
chr2 (298-334)||(35580776-35580812)
chr2 (297-336)||(962666-962705)
chr2 (297-336)||(31468801-31468840)
chr2 (307-336)||(31385805-31385834)
chr2 (292-341)||(37105987-37106036)
chr2 (297-338)||(40679680-40679721)
chr2 (292-332)||(3672773-3672813)
chr2 (292-336)||(5542671-5542715)
chr2 (292-336)||(6422178-6422222)
chr2 (292-336)||(15511541-15511585)
chr2 (300-336)||(35580494-35580530)
chr2 (297-333)||(36178320-36178356)
chr2 (292-336)||(36784306-36784350)
[»] scaffold0014 (1 HSPs)
scaffold0014 (282-363)||(197770-197849)
[»] scaffold0702 (1 HSPs)
scaffold0702 (292-336)||(560-604)
[»] scaffold0078 (1 HSPs)
scaffold0078 (292-336)||(5425-5469)
[»] chr1 (24 HSPs)
chr1 (292-336)||(17294645-17294689)
chr1 (292-334)||(45494020-45494062)
chr1 (292-333)||(29798270-29798311)
chr1 (299-336)||(44290511-44290548)
chr1 (292-336)||(5320011-5320055)
chr1 (292-336)||(26661568-26661612)
chr1 (292-336)||(26661944-26661988)
chr1 (292-336)||(34364993-34365037)
chr1 (297-336)||(22077161-22077200)
chr1 (297-336)||(32168749-32168788)
chr1 (292-334)||(37556181-37556223)
chr1 (292-334)||(38804401-38804443)
chr1 (292-334)||(41759553-41759595)
chr1 (292-333)||(3550791-3550832)
chr1 (307-336)||(44290886-44290915)
chr1 (292-336)||(14318935-14318979)
chr1 (297-333)||(19283506-19283542)
chr1 (298-338)||(30630690-30630730)
chr1 (292-336)||(32594762-32594806)
chr1 (298-338)||(34649504-34649544)
chr1 (292-336)||(39066246-39066290)
chr1 (292-336)||(41157059-41157103)
chr1 (292-336)||(41157443-41157487)
chr1 (292-336)||(44043818-44043862)
[»] chr8 (22 HSPs)
chr8 (297-336)||(3038341-3038380)
chr8 (292-335)||(30441154-30441197)
chr8 (292-337)||(147887-147932)
chr8 (292-336)||(5915935-5915979)
chr8 (292-336)||(9483233-9483277)
chr8 (282-338)||(12156694-12156750)
chr8 (292-336)||(20870619-20870663)
chr8 (292-336)||(30359339-30359383)
chr8 (297-332)||(32640583-32640618)
chr8 (297-336)||(40518139-40518178)
chr8 (292-338)||(6651560-6651606)
chr8 (292-333)||(3669758-3669799)
chr8 (292-333)||(34834947-34834988)
chr8 (292-336)||(3670128-3670172)
chr8 (297-333)||(9507853-9507889)
chr8 (292-336)||(18371707-18371750)
chr8 (290-334)||(18372038-18372082)
chr8 (297-337)||(18829893-18829933)
chr8 (292-336)||(33113413-33113457)
chr8 (292-336)||(34835277-34835321)
chr8 (292-336)||(34835543-34835587)
chr8 (292-336)||(34835809-34835853)
[»] scaffold0391 (2 HSPs)
scaffold0391 (292-336)||(1737-1781)
scaffold0391 (299-333)||(1159-1193)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 14169230 - 14169139
Alignment:
Q  172 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169230 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 14169415 - 14169324
Alignment:
Q  172 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169415 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 13042651 - 13042590
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 353  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatc 13042590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 41340419 - 41340325
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||| |||||||| |||||||||  | ||||||| |||||||||||||||| |||||||||||| || |||| ||||||| | ||||||||| ||||    
T  41340419 caaacgtccaagaccataagaga--cttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctcttatatatcttttg 41340325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 34103669 - 34103601
Alignment:
Q  289 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatccttt 357  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||| |||| || | |||||||||||||    
T  34103669 taaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctcttatatatccttt 34103601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 41341577 - 41341501
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||| ||||||| ||| ||||| | ||||||||||||||||| || |||||||||||| | ||||||||||||||    
T  41341577 agagacttaaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttatatatcctttg 41341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 41170748 - 41170702
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41170748 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 41170702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 13112649 - 13112588
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 353  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  ||| | |||||||||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatc 13112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 5963805 - 5963729
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||| ||||||| ||||||||| ||||||||||||||||   | | |||||||||||| | ||||||||||||||    
T  5963805 agagacttaaacaccacactcttacccaaaaccttaaggcatcagatctatgggttccctctcttatatatcctttg 5963729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 6500934 - 6500890
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatgggt 6500890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 26074724 - 26074680
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  26074724 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 26074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 18603171 - 18603210
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18603171 acactcttacccaaaaccttaaggcaatgggtttatgggt 18603210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 32487500 - 32487461
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32487500 acactcttacccaaaaccttaaggcaatgggtttatgggt 32487461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 14169037 - 14168980
Alignment:
Q  301 tcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    ||||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttg 14168980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 9498700 - 9498744
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||    
T  9498700 acaccacactcttacccaaaatcttaaggcaatgggtttatgggt 9498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 26074192 - 26074236
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  26074192 acaccacactcttacccaaaaccttaaggcaatgggttcatgggt 26074236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 40296361 - 40296405
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  40296361 acaccacactcttacccaaaacctcaaggcaatgggtttatgggt 40296405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 6500562 - 6500523
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggttta 331  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  6500562 acaccacactcttacccaaaaccttaaggcaatgggttta 6500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 29549306 - 29549345
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  29549306 acactcttatccaaaaccttaaggtaatgtgtttatgggt 29549345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 34753076 - 34753115
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  34753076 acactcttacccaaaaccttaaggcaatcggtttatgggt 34753115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 36521947 - 36521986
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  36521947 acactcttacccaaaaccttaaggcaattggtttatgggt 36521986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 33747883 - 33747841
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  33747883 acaccacactcttatccaaaatcttaaggcaatgagtttatgg 33747841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 11417028 - 11417065
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||  |||||||||||||||||||||||||||    
T  11417028 acactcttacacaaaaccttaaggcaatgggtttatgg 11417065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 24489257 - 24489298
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||||||  ||||| |||||||||||||||||||||||||    
T  24489257 acactcttacgcaaaatcttaaggcaatgggtttatgggttc 24489298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 26075223 - 26075252
Alignment:
Q  307 ccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||||||||||||    
T  26075223 ccaaaaccttaaggcaatgggtttatgggt 26075252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 36527146 - 36527183
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  36527146 acactcttatccaaaatcttaaggcaatgcgtttatgg 36527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 624308 - 624264
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  624308 acaccacactcttacccaaaacctcaaggctatgggtttatgggt 624264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 2411117 - 2411073
Alignment:
Q  294 actacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||    
T  2411117 actacactcttactcaaaaccttaaggcaataagtttatgggttc 2411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 3295061 - 3295105
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||| || ||||||||| ||||||||||||||||||||    
T  3295061 acaccacactcatacccaaaacctcaaggcaatgggtttatgggt 3295105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 25328047 - 25328003
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||| | |||||||||||    
T  25328047 acaccacactcttacccaaaaccttaaggcattaggtttatgggt 25328003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 48071526 - 48071432
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||| ||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||| |||||||| ||||||| | ||||||||||||||    
T  48071526 caaacgtccaagatcataagaga--cttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccctctcttatatatcctttg 48071432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 27391805 - 27391885
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttc 362  Q
    |||||| ||||||| ||||||||| | |||||||||||||| ||| |||||||||| | | | ||||||||||||||||||    
T  27391805 agagacttaaacaccacactcttacctaaaaccttaaggcagtggatttatgggtttcatgtcttatatatcctttgcttc 27391885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 7517692 - 7517648
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  7517692 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 7517648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 11845303 - 11845259
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  11845303 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 11845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 1085667 - 1085706
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1085667 acactcttacccaaaaccttaaggcaatgggtttatgggt 1085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 22566713 - 22566752
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22566713 acactcttacccaaaaccttaaggcaatgggtttatgggt 22566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 21416187 - 21416249
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 354  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 21416249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 23569053 - 23569091
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  23569053 acactcttacccaaaaccttaaggcaatgggtttatggg 23569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 30253604 - 30253558
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  30253604 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 30253558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 8802344 - 8802250
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||| |||||||| |||||||||  | ||||||| || ||||||  |||||| | ||| ||||| ||||||||||||||| | ||||||||||||||    
T  8802344 caaacgtccaagaccataagaga--cttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttatatatcctttg 8802250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 8802640 - 8802546
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||||||| || |||||||||  | ||||||| ||||||||| |||||| |||||  || || ||||||||||||||  | ||||||||||||||    
T  8802640 caaatgtccatgaccataagaga--cttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttatatatcctttg 8802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 30244382 - 30244341
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  30244382 acaccacactcttacccaaaaccttaaggcaatgggtttatg 30244341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 23423 - 23467
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  23423 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 6054672 - 6054628
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  6054672 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 6054628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 29157677 - 29157633
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  29157677 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 29157633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 30245189 - 30245145
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  30245189 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 30245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 37533410 - 37533454
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  37533410 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 37533454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 14681622 - 14681579
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||    
T  14681622 acaccacactcttacccaaaaccttaagacaatgggtttatggg 14681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 7554137 - 7554095
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  7554137 acaccacactcttacccaaaaccttaaggctatgggtttatgg 7554095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 16569302 - 16569264
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16569302 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16569264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 16596360 - 16596398
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16596360 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16596398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 28300304 - 28300342
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  28300304 acactcttacccaaaatcttaaggcaatgggtttatggg 28300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 36939777 - 36939823
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  36939777 aaacaccacacttttacccaaaaccttaaggcaatggatttatgggt 36939823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 19122843 - 19122802
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  19122843 acaccacactcttacccaaaaccttaaggcaatggatttatg 19122802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 34218080 - 34218121
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatg 34218121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 45754827 - 45754786
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||| |||||||||||    
T  45754827 acaccacactcttacccaaaaccttaaggctatgggtttatg 45754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 8128487 - 8128531
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||||    
T  8128487 acaccacactcttaaccaaaaccttaaggttatgggtttatgggt 8128531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 21619091 - 21619135
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  21619091 acaccacacttttacccaaaaccttaagacaatgggtttatgggt 21619135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 22567085 - 22567129
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||    
T  22567085 acaccacactcttaccaaaaaccttaaggcaatgagtttatgggt 22567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 21130100 - 21130169
Alignment:
Q  289 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||    
T  21130100 taaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttg 21130169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 22605038 - 22605132
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    ||||||||||||| ||||||||||   |||||||  ||||||||||||||| ||||||  ||||||||||||| |||||| | ||||||||||||||    
T  22605038 caaatgtccaagaccataagagagt--taaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatatatcctttg 22605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 22605273 - 22605367
Alignment:
Q  262 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||| |||||||| |||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  22605273 caaacgtccaagaccataagaga--cttaaacaccacattcttacccaaaaccttaaggcaatgggtttatgggtttccactcttatatatcctttg 22605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 1846860 - 1846816
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  1846860 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 1846816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 2377866 - 2377822
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  2377866 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 2377822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 16454682 - 16454643
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  16454682 acactcttatccaaaatcttaaggcaatgggtttatgggt 16454643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 3058338 - 3058296
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  3058338 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 3058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 35210318 - 35210272
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  35210318 aaacaccacactcttacccaaaaccttaaggcaatggttttatgggt 35210272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 16107790 - 16107749
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  16107790 acaccacactcttacccaaaaccttaaggcaatgggtttatg 16107749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 2578489 - 2578533
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  2578489 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 2578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 3409371 - 3409327
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  3409371 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 3409327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 3415570 - 3415526
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  3415570 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 3415526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 10074037 - 10074081
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  10074037 acaccacacttttacccaaaaccttaaggcaatgggtttatgggt 10074081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 10074409 - 10074453
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  10074409 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 10074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 11637767 - 11637811
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggt 11637811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 29518615 - 29518571
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29518615 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 29519032 - 29518988
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29519032 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 32460631 - 32460667
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32460631 acactcttacccaaaaccttaaggcaatgggtttatg 32460667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 32741291 - 32741247
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  32741291 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 32741247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 16455014 - 16454975
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  16455014 acactcttacccaaaaccttaaggcaataggtttatgggt 16454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 2843662 - 2843624
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  2843662 acactcttacccaaaaccttaaggcaatgagtttatggg 2843624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 6071239 - 6071202
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  6071239 acactcttatccaaaatcttaaggcaatgagtttatgg 6071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 6999847 - 6999884
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6999847 acactcttatccaaaaccttaaggcagtgagtttatgg 6999884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 1127467 - 1127431
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  1127467 acactcttacccaaaaccttaaggtaatgggtttatg 1127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 17731949 - 17732016
Alignment:
Q  291 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17731949 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttg 17732016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 19033180 - 19033247
Alignment:
Q  291 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19033180 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttg 19033247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 54017594 - 54017665
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttct 363  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttct 54017665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 16870995 - 16871071
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||| |||||    
T  16870995 agagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttg 16871071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 17735027 - 17735103
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||    
T  17735027 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttg 17735103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 19036296 - 19036372
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 358  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||    
T  19036296 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttg 19036372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 22304001 - 22304045
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  22304001 acaccacactcttatccaaaaccttaaggcaatgggtttatgggt 22304045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 22303703 - 22303749
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22303703 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 22303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 3135500 - 3135543
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  3135500 acaccacactcttatctaaaaccttaaggcaatgggtttatggg 3135543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 52634782 - 52634743
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52634782 acactcttacccaaaaccttaaggcaatgggtttatgggt 52634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 32589809 - 32589771
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  32589809 cactcttacccaaaaccttaaggcaatgggtttatgggt 32589771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 43346837 - 43346883
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  43346837 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 43346883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 16868419 - 16868476
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttcc 339  Q
    |||||| ||||||  |||||||||||||||| |||||||||||| |||||||| ||||    
T  16868419 agagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatggattcc 16868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 29644632 - 29644673
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  29644632 acactcttacccaaaaccttaagacaatgggtttatgggttc 29644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 48127861 - 48127922
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 353  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||  ||| | |||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatc 48127922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 12114608 - 12114652
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  12114608 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 12114652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 15772966 - 15772922
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||    
T  15772966 acaccacactcttatccaaaaccttaaagcaatgagtttatgggt 15772922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 22304681 - 22304637
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  22304681 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 22304637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 39389182 - 39389138
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  39389182 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 39389138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 16869833 - 16869892
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 341  Q
    |||||| ||||||| ||||||||   |||||||||||||||||| ||||||| |||||||    
T  16869833 agagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccct 16869892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 29644953 - 29644992
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  29644953 acactcttacccaaaaccttaagacaatgggtttatgggt 29644992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 41359820 - 41359855
Alignment:
Q  301 tcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41359820 tcttacccaaaaccttaaggcaatgggtttatgggt 41359855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 47964569 - 47964608
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  47964569 acactcttacccaaaaccttaaggcaataggtttatgggt 47964608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 1634366 - 1634404
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  1634366 cactcttacccaaaaccttaagccaatgggtttatgggt 1634404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 53118021 - 53118059
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggttt 330  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  53118021 acactacactcttacccaaaatcttaaggcaatgggttt 53118059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 53596072 - 53596010
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 354  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596072 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 53596387 - 53596325
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 354  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596387 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 16143551 - 16143506
Alignment:
Q  291 aacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  16143551 aacactacactcttacccaaaactttaaggcaatgagcttatgggt 16143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 32462609 - 32462646
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  32462609 acactcttatccaaaaccttaaagcaataggtttatgg 32462646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 32462946 - 32462987
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  32462946 acaccacactcttactcaaaaccttaaggcaatgggtttatg 32462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 37990685 - 37990726
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatg 37990726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 46546376 - 46546413
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||  |||||||||||||||||||||||||||    
T  46546376 acactcttacacaaaaccttaaggcaatgggtttatgg 46546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 4823767 - 4823723
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  4823767 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 4823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 35946634 - 35946590
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  35946634 acaccacacttttacccaaaaccttaaggcaacgggtttatgggt 35946590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 42342141 - 42342177
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  42342141 acactcttacccaaaaccttaaggcaatgagtttatg 42342177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 1868158 - 1868102
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 353  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||    
T  1868158 acactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatatatc 1868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 22183313 - 22183352
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22183313 acactcttatccaaaaccttaaggcaatgggtttatgggt 22183352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 10396523 - 10396466
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 354  Q
    |||||||||||||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  10396523 acactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 10396466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 41370469 - 41370425
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  41370469 acactacactcttacccaaaactttaaggcaatgggtttatgggt 41370425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 49303018 - 49302974
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  49303018 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 49302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 50630799 - 50630843
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  50630799 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 50630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 54936308 - 54936264
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  54936308 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 54936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 1731689 - 1731735
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||    
T  1731689 aaacaccacactcttacccaaaaccttaaggcaattggtttatgggt 1731735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 11197338 - 11197276
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 354  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 11197276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 25483448 - 25483406
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  25483448 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 25483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 44620460 - 44620422
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44620460 acactcttacccaaaaccttaaggcaatgggtttatggg 44620422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 3271894 - 3271853
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  3271894 acactcttacccaaaaccttaaggcaataggtttatgggttc 3271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 3340919 - 3340875
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||    
T  3340919 acaccacactcttacccaaaaccttaaggcagtgggtttatgggt 3340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 4955366 - 4955402
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4955366 acactcttacccaaaaccttaaggcaatgggtttatg 4955402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 18932793 - 18932837
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  18932793 acaccacactcttacctaaaaccttaaggcaatgggtttatgggt 18932837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 36629349 - 36629305
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  36629349 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 36629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 55933168 - 55933212
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  55933168 acaccacactcttacccaaaactttaaggcaatgggtttatgggt 55933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 31691259 - 31691220
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31691259 acactcttacccaaaaccttaaggcaatgagtttatgggt 31691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 51681653 - 51681590
Alignment:
Q  289 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatat 352  Q
    ||||||| ||||||||| |||||| ||||||||||||||| |||| || |||| | ||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatat 51681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 54017644 - 54017683
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  54017644 acactcttacctaaaaccttaaggcaatgggtttatgggt 54017683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 23817725 - 23817766
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  23817725 acaccacactcttacccaaaaccttaaggcaatgagtttatg 23817766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 34646693 - 34646734
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 922530 - 922486
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||||||||| || |||| ||||||||||||||||    
T  922530 acaccacactcttatccaaacccctaagacaatgggtttatgggt 922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 15841417 - 15841453
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  15841417 acactcttacccaaaaccttaaggcaatgtgtttatg 15841453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 32941172 - 32941208
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  32941172 acactcttacccaaaaccttaaggcaatgagtttatg 32941208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 49880264 - 49880228
Alignment:
Q  300 ctcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| |||||||||||||||| |||||||||||||    
T  49880264 ctcttacccaaaaccttaaggcagtgggtttatgggt 49880228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 50002538 - 50002494
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||    
T  50002538 acaccacactcttacccaaaaccttaagacaatggatttatgggt 50002494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 54109024 - 54108981
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  54109024 acaccacactcttacccaaaac-ttaaggcaatgggtttatgggt 54108981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 29874074 - 29874113
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29874074 acactcttatccaaaaccttaaggcaatgggtttatgggt 29874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 36178222 - 36178266
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttccct 341  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  36178222 acactcttacccaaaatcttaaggcaatgggtttatgggttccct 36178266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 36178651 - 36178695
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  36178651 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 36178695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 37895105 - 37895153
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  37895105 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgtgttc 37895153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 14745345 - 14745384
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745345 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 14745718 - 14745757
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745718 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 15880370 - 15880331
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15880370 acactcttacccaaaaccttaaggcaatgggtttatgggt 15880331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 37106302 - 37106256
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||    
T  37106302 aaacaccacactcttacccaaaaccttaaggaaatgggtttatgggt 37106256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 6421843 - 6421799
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  6421843 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 6421799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 28254283 - 28254327
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  28254283 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 28254327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 35580776 - 35580812
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35580776 cactcttacccaaaaccttaaggcaatgggtttatgg 35580812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 962705 - 962666
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  962705 acactcttacccaaaaccttaagacaatgggtttatgggt 962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 31468801 - 31468840
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31468801 acactcttacccaaaaccttaaggcaatgagtttatgggt 31468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Complemental strand, 31385834 - 31385805
Alignment:
Q  307 ccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||||||||||||    
T  31385834 ccaaaaccttaaggcaatgggtttatgggt 31385805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 37106036 - 37105987
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 341  Q
    |||| ||||||||| |||||| |||||||||||| |||||||||| ||||    
T  37106036 acaccacactcttacccaaaatcttaaggcaatgagtttatgggtcccct 37105987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 40679680 - 40679721
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  40679680 acactcttacccaaaatcttaaggcgatgggtttatgggttc 40679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 3672813 - 3672773
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttat 332  Q
    |||| ||||||||| |||||| |||||||||||||||||||    
T  3672813 acaccacactcttacccaaaatcttaaggcaatgggtttat 3672773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 5542671 - 5542715
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | |||||||||||||||| |||||||||||    
T  5542671 acaccacactcttaccaaaaaccttaaggcaataggtttatgggt 5542715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 6422222 - 6422178
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  6422222 acaccacactcttacctaaaaccttaaggctatgggtttatgggt 6422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 15511541 - 15511585
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  15511541 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 15511585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 35580494 - 35580530
Alignment:
Q  300 ctcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  35580494 ctcttacccaaaaccttaaggcaatgagtttatgggt 35580530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 36178320 - 36178356
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  36178320 acactcttacccaaaaccttaagacaatgggtttatg 36178356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 36784306 - 36784350
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  36784306 acacaacacttttatccaaaaccttaagacaaagggtttatgggt 36784350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 197849 - 197770
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttct 363  Q
    |||||| ||||||| ||||||||||||||   ||||||||||||| ||||||| |||||| | |||||||||||||| ||||    
T  197849 agagacttaaacaccacactcttatccaat--cttaaggcaatggatttatggattccctctcttatatatcctttgtttct 197770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 560 - 604
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  560 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 5469 - 5425
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  5469 acaccacactcttatccaaaatcttaaggcaatgggtttatgggt 5425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 17294689 - 17294645
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  17294689 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 17294645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 45494020 - 45494062
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  45494020 acaccacactcttatccaaaactttaaggcaatgggtttatgg 45494062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 29798311 - 29798270
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  29798311 acaccacactcttatccaagaccttaaggcaatgggtttatg 29798270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 44290511 - 44290548
Alignment:
Q  299 actcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44290511 actcttacccaaaaccttaaggcaatgggtttatgggt 44290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 5320011 - 5320055
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||    
T  5320011 acactacactcttacccaaaaccttaaggctatgagtttatgggt 5320055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 26661568 - 26661612
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  26661568 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 26661612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 26661944 - 26661988
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  26661944 acaccacactcttacccaaaaccttaaggcaatcggtttatgggt 26661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 34365037 - 34364993
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  34365037 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 34364993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 22077161 - 22077200
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  22077161 acactcttatccaaaaccttagggcaatgagtttatgggt 22077200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 32168749 - 32168788
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  32168749 acactcttacccaaaacctcaaggcaatgggtttatgggt 32168788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 37556223 - 37556181
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  37556223 acaccacactcttacccaaaaccttaaggctatgggtttatgg 37556181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 38804401 - 38804443
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  38804401 acactacactcttacccaaaaccttaaggttatgggtttatgg 38804443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 41759595 - 41759553
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  41759595 acaccacactcttacccaaaaccttaaggcaatggatttatgg 41759553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 3550832 - 3550791
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  3550832 acaccacactcttacccaaaactttaaggcaatgggtttatg 3550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 44290886 - 44290915
Alignment:
Q  307 ccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||||||||||||||||||||||||    
T  44290886 ccaaaaccttaaggcaatgggtttatgggt 44290915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 14318979 - 14318935
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||||||| | |||||||||    
T  14318979 acaccacactcttacccaaaaccttaaggcaatagatttatgggt 14318935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 19283506 - 19283542
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  19283506 acactcttatccaaaaccttaaggcgatgagtttatg 19283542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 30630690 - 30630730
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  30630690 cactcttacccaaaactttaaggcaatgtgtttatgggttc 30630730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 32594762 - 32594806
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||| ||||| ||||||||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatgggt 32594806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 34649544 - 34649504
Alignment:
Q  298 cactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  34649544 cactcttacccaaaaccttaaggcattaggtttatgggttc 34649504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 39066246 - 39066290
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||||||||||||||||| |||||  |||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatgattttatgggt 39066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 41157103 - 41157059
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||| |||||| ||||||||||    
T  41157103 acaccacactcttacccaaaaccttaaagcaatgagtttatgggt 41157059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 41157487 - 41157443
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  41157487 acaccacactcttactcaaaacctaaaggcaatgggtttatgggt 41157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 44043818 - 44043862
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  44043818 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 44043862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 3038341 - 3038380
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3038341 acactcttacccaaaaccttaaggcaatgggtttatgggt 3038380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 30441197 - 30441154
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatggg 335  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  30441197 acaccacactcttacccaaaaccttaaggcaatgggtttatggg 30441154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 147932 - 147887
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggtt 337  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  147932 acaccacactcttacccaaaaccttaaggcaataggtttatgggtt 147887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 5915979 - 5915935
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  5915979 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 5915935  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 9483233 - 9483277
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  9483233 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 9483277  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 12156694 - 12156750
Alignment:
Q  282 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||||| ||||||  ||||||||| ||||||||||||| ||||||||||||| ||||    
T  12156694 agagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttc 12156750  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 20870619 - 20870663
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||    
T  20870619 acaccacactcttatccaaaatcttaaggcagtgggtttatgggt 20870663  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 30359383 - 30359339
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  30359383 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 30359339  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 32640583 - 32640618
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttat 332  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32640583 acactcttacccaaaaccttaaggcaatgggtttat 32640618  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 40518178 - 40518139
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  40518178 acactcttacccaaaaccttaaggcattgggtttatgggt 40518139  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 6651606 - 6651560
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 338  Q
    |||| ||||||||| |||||||||||||||||||  |||||||||||    
T  6651606 acaccacactcttacccaaaaccttaaggcaatgaatttatgggttc 6651560  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 3669799 - 3669758
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatg 3669758  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 34834988 - 34834947
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34834947  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 3670172 - 3670128
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||||    
T  3670172 acaccacactcttacccaaaaccttaaggaaataggtttatgggt 3670128  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 9507889 - 9507853
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  9507889 acactcttacccaaaaccttaaggtaatgggtttatg 9507853  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 18371707 - 18371750
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  18371707 acaccacactcttacccaaaaccttaaggc-atgggtttatgggt 18371750  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 18372038 - 18372082
Alignment:
Q  290 aaacactacactcttatccaaaaccttaaggcaatgggtttatgg 334  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||    
T  18372038 aaacaccacactcttacccaaaaccttaaagcaatgagtttatgg 18372082  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 18829893 - 18829933
Alignment:
Q  297 acactcttatccaaaaccttaaggcaatgggtttatgggtt 337  Q
    |||||||||||||||| | ||||||||||||||||| ||||    
T  18829893 acactcttatccaaaatcctaaggcaatgggtttataggtt 18829933  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 33113413 - 33113457
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  33113413 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 33113457  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 34835321 - 34835277
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835321 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835277  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 34835587 - 34835543
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835587 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835543  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 34835853 - 34835809
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835853 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835809  T

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Target: scaffold0391 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 1737 - 1781
Alignment:
Q  292 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 336  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  1737 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 1781  T

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Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 1159 - 1193
Alignment:
Q  299 actcttatccaaaaccttaaggcaatgggtttatg 333  Q
    ||||||| |||||||||||||||||||||||||||    
T  1159 actcttacccaaaaccttaaggcaatgggtttatg 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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