View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_27 (Length: 360)

Name: NF19839_low_27
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_27
NF19839_low_27
[»] chr4 (13 HSPs)
chr4 (164-296)||(29893837-29893969)
chr4 (164-313)||(33394914-33395067)
chr4 (24-163)||(27134844-27134984)
chr4 (164-313)||(50646530-50646683)
chr4 (164-296)||(48542310-48542442)
chr4 (164-284)||(33394459-33394580)
chr4 (166-296)||(44087987-44088117)
chr4 (169-284)||(40260572-40260688)
chr4 (164-284)||(29893343-29893464)
chr4 (164-284)||(50646058-50646177)
chr4 (164-266)||(48541396-48541499)
chr4 (213-267)||(43323536-43323590)
chr4 (166-225)||(43326037-43326096)
[»] chr1 (15 HSPs)
chr1 (164-313)||(33659860-33660013)
chr1 (24-138)||(573972-574087)
chr1 (162-313)||(28283758-28283913)
chr1 (164-253)||(26244444-26244533)
chr1 (168-286)||(37335008-37335126)
chr1 (164-262)||(50616003-50616102)
chr1 (164-262)||(50623831-50623930)
chr1 (165-225)||(4426247-4426307)
chr1 (164-240)||(10891688-10891764)
chr1 (201-296)||(50615097-50615190)
chr1 (201-296)||(50622925-50623018)
chr1 (192-266)||(28284552-28284627)
chr1 (16-63)||(47683492-47683539)
chr1 (164-222)||(47213884-47213942)
chr1 (166-222)||(45813229-45813284)
[»] chr6 (5 HSPs)
chr6 (24-163)||(2471646-2471785)
chr6 (164-284)||(6608385-6608505)
chr6 (167-225)||(6606653-6606711)
chr6 (164-225)||(6607605-6607666)
chr6 (164-222)||(29429500-29429558)
[»] chr5 (10 HSPs)
chr5 (24-163)||(8981121-8981260)
chr5 (167-313)||(38943090-38943240)
chr5 (164-296)||(19033580-19033712)
chr5 (201-296)||(37922737-37922832)
chr5 (163-284)||(19033103-19033225)
chr5 (164-284)||(37923425-37923546)
chr5 (169-284)||(2332263-2332379)
chr5 (164-284)||(38943594-38943719)
chr5 (164-225)||(2331443-2331504)
chr5 (164-222)||(10361047-10361105)
[»] chr3 (18 HSPs)
chr3 (179-313)||(13648427-13648561)
chr3 (164-296)||(10030479-10030611)
chr3 (164-313)||(51800951-51801105)
chr3 (164-313)||(27042985-27043137)
chr3 (164-313)||(46416033-46416186)
chr3 (164-284)||(10029994-10030115)
chr3 (164-284)||(10257717-10257838)
chr3 (189-313)||(38507781-38507909)
chr3 (164-284)||(10181347-10181468)
chr3 (164-284)||(10124915-10125036)
chr3 (164-284)||(51801429-51801550)
chr3 (163-224)||(13647689-13647750)
chr3 (171-284)||(33464155-33464269)
chr3 (163-265)||(38506981-38507084)
chr3 (166-225)||(27043912-27043971)
chr3 (167-225)||(33464956-33465014)
chr3 (168-222)||(34266839-34266893)
chr3 (166-222)||(46961671-46961727)
[»] chr8 (5 HSPs)
chr8 (164-296)||(43139149-43139281)
chr8 (164-296)||(21570910-21571042)
chr8 (164-284)||(21570416-21570537)
chr8 (164-222)||(42840446-42840504)
chr8 (162-222)||(45376207-45376267)
[»] chr7 (6 HSPs)
chr7 (164-296)||(7475025-7475157)
chr7 (167-313)||(28870317-28870467)
chr7 (163-313)||(47514338-47514484)
chr7 (164-284)||(28869836-28869961)
chr7 (164-284)||(47513543-47513664)
chr7 (164-225)||(44185801-44185862)
[»] chr2 (7 HSPs)
chr2 (163-313)||(38825873-38826027)
chr2 (170-296)||(40133670-40133796)
chr2 (163-284)||(1156131-1156253)
chr2 (164-238)||(1156930-1157004)
chr2 (164-238)||(2283628-2283702)
chr2 (201-284)||(2285557-2285641)
chr2 (164-225)||(40129171-40129232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-296)||(60341-60473)
[»] scaffold0072 (2 HSPs)
scaffold0072 (164-284)||(16237-16357)
scaffold0072 (162-225)||(17041-17104)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 29893969 - 29893837
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
29893969 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttattttatttgctgttacatttacatcctgcattttatatttcaattt 29893870  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    ||| || ||||||||||||||||||||||||||    
29893869 atagccttattcaattataatttgactcaaatt 29893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 33395067 - 33394914
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
33395067 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattctaattt 33394968  T
264 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
33394967 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 33394914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 27134984 - 27134844
Alignment:
24 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatc-ttttttg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || |||||||    
27134984 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtctttttttg 27134885  T
123 aggcacaggtggtctcnnnnnnngcctgttctgtttatgag 163  Q
    ||||| ||||||||||       ||||||||||||||||||    
27134884 aggcataggtggtctctttttttgcctgttctgtttatgag 27134844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 50646683 - 50646530
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||  |||||    
50646683 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacaccctgtattttatattctaattt 50646584  T
264 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    |||  |||| |||||||||||||||||||    |||||||||||||||||||||    
50646583 atagtcctactcaattataatttgactcaaattaatttacttgtaaatacatta 50646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 48542442 - 48542310
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||| | | | |||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||| ||||||    
48542442 ggcgagttttagcatggggcaattgtgaaactgctccatcttagatcaattttattttatttgctattatatgtacaccctgcattttatattccaattt 48542343  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    ||| ||||| ||||||||||||||| |||||||    
48542342 atagccctactcaattataatttgattcaaatt 48542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 33394459 - 33394580
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
33394459 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 33394558  T
263 tataaccctattcaattataat 284  Q
    |||| || |||||| |||||||    
33394559 tatagccatattcatttataat 33394580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 44088117 - 44087987
Alignment:
166 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttat 265  Q
    ||||||||| |||||||||||||| ||||| |   |||||||| ||||||||||||||||  |  |||||||||| |||||||||||||||  |||||||    
44088117 cgagttttaacatggggcaattgtcaaattgcttcatcttagaacaattttgttttatttgttactacatgtacaccctgcattttatattctaatttat 44088018  T
266 aaccctattcaattataatttgactcaaatt 296  Q
    | ||||| |||||||||||||||||||||||    
44088017 agccctactcaattataatttgactcaaatt 44087987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 40260572 - 40260688
Alignment:
169 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataa 267  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||  ||| || ||| || ||||||||| |||||||||     
40260572 gttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttactattagttgtccaccctacatttttatattccaatttatag 40260671  T
268 ccctattcaattataat 284  Q
    || |||| | |||||||    
40260672 ccatatttatttataat 40260688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 29893343 - 29893464
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||| ||||| ||||||| ||||| | | |||||||||||||||||||||||||  | |||  ||||||||||||| ||||||||| |||||    
29893343 ggcgagttttagtatgggacaattgtcaaattgctccatcttagatcaattttgttttatttgttattaattgtacatcctgcatttttatattccaatt 29893442  T
263 tataaccctattcaattataat 284  Q
    |||| || |||||| |||||||    
29893443 tatagccatattcatttataat 29893464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 50646058 - 50646177
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||| |||||  |||||||||||||| |||  ||||||||||| | |||||||||||||||    
50646058 ggcgagttttagcatggagcaattgtcaaattgccccatcttaaatcaa--ttgttttatttactattaattgtacatcctgtatttttatatttcaatt 50646155  T
263 tataaccctattcaattataat 284  Q
    ||||  | |||||| |||||||    
50646156 tatagtcatattcatttataat 50646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 48541396 - 48541499
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    ||||||||||||||||||  |||||| ||||| | | || ||||||||||||||||||||||| | |||  ||| || | |||| |||||||||| ||||    
48541396 ggcgagttttagcatgggttaattgtcaaattgctccatattagatcaattttgttttatttattattagttgtccaccttgcatttttatattttaatt 48541495  T
263 tata 266  Q
    ||||    
48541496 tata 48541499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 43323536 - 43323590
Alignment:
213 ttttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 267  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||| |||||    
43323536 ttttgttttatttgctattacatttacaccctgcattttatatttcaatctataa 43323590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 43326096 - 43326037
Alignment:
166 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||    
43326096 cgagttttagcatgggacaattgtcaaactgtcccatcttaaatcaattttgttttattt 43326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 33660013 - 33659860
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||    
33660013 ggcgagttttagcatggggcaattgtgaaattgcccaatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaattt 33659914  T
264 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    ||||||||| ||||||||||||||| |||    |||||||||||||||||||||    
33659913 ataaccctactcaattataatttgattcaaattaatttacttgtaaatacatta 33659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 574087 - 573972
Alignment:
24 atcacatgcttgcaatatagtgagctaatgatggtggtttataa-gatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
574087 atcacatgcttgcaatatagtgagctaatgatggtggtttataaagatgcctagtaacagtagtagcaaagagacagaagcggtggccttatcttttttg 573988  T
123 aggcacaggtggtctc 138  Q
    ||||||||||||||||    
573987 aggcacaggtggtctc 573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 28283758 - 28283913
Alignment:
162 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaat 261  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||    
28283758 agggcgagttttagcatggggcaattgtgaaattgtcccatcttagatcaattttattttatttgttgttacatgtacatcctgcattttatattccaat 28283857  T
262 ttataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    ||||| | ||| ||||||||||||||| |||    |||||||||||||||||||||    
28283858 ttatagctctactcaattataatttgattcaaattaatttacttgtaaatacatta 28283913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 26244533 - 26244444
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttat 253  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
26244533 ggcgagttttagcatggggtaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttat 26244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 37335126 - 37335008
Alignment:
168 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 267  Q
    ||||| |||||||||||||| | ||||| | | ||||||||||||||||||||||||| ||  ||||| |||||| |||||||||||||  ||||||||     
37335126 agtttcagcatggggcaattctcaaattgctccatcttagatcaattttgttttatttgctactacatatacatcatgcattttatattctaatttatag 37335027  T
268 ccctattcaattataattt 286  Q
    |||||||||||||||||||    
37335026 ccctattcaattataattt 37335008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 50616102 - 50616003
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
50616102 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50616003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 50623930 - 50623831
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
50623930 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50623831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 4426247 - 4426307
Alignment:
165 gcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||||||||||||| |||||||||  ||||||| | |||||||||||||||||||||||||    
4426247 gcgagttttagcatagggcaattgacaaattactccatcttagatcaattttgttttattt 4426307  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 10891764 - 10891688
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtaca 240  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||||||||||||||| |||| || | |||| ||||||    
10891764 ggcgggttttagcatggggcaatggaaaaatttccccatcttagatcaattttgtcttatctattattacttgtaca 10891688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 50615097 - 50615190
Alignment:
201 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 296  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
50615097 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50615190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 50622925 - 50623018
Alignment:
201 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 296  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
50622925 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 28284627 - 28284552
Alignment:
192 aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttata 266  Q
    |||| ||| ||||||||||||||||||||||||| || |||  ||| || | |||| |||||||||||||||||||    
28284627 aattgccccatcttagatcaattttgttttatttgctattagctgtccaccttgcatttttatatttcaatttata 28284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 47683492 - 47683539
Alignment:
16 acatcatcatcacatgcttgcaatatagtgagctaatgatggtggttt 63  Q
    |||||||  |||||||||||| || |||||||||||||||||||||||    
47683492 acatcatgctcacatgcttgcgatgtagtgagctaatgatggtggttt 47683539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 47213884 - 47213942
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||||||  |||||| ||||| | | |||||| |||||||||||||||    
47213884 ggcgagttttagcatgggtaaattgtcaaatttctccatcttatatcaattttgtttta 47213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 45813284 - 45813229
Alignment:
166 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
45813284 cgagttttagcatgggtaaattgtcaaattttcc-atcttagatcaattttgtttta 45813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 2471785 - 2471646
Alignment:
24 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
2471785 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtcttttttga 2471686  T
124 ggcacaggtggtctcnnnnnnngcctgttctgtttatgag 163  Q
    |||| ||||||||||       ||||||||||||||||||    
2471685 ggcataggtggtctctttttttgcctgttctgtttatgag 2471646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 6608505 - 6608385
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||| ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| || |||  |||||||||| ||||||||||| ||||||    
6608505 ggcgggttttagcatgggacaattgttaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctacattttatattccaattt 6608406  T
264 ataaccctattcaattataat 284  Q
    ||| | ||||| |||||||||    
6608405 atagctctatttaattataat 6608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 6606653 - 6606711
Alignment:
167 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
6606653 gagttttagcatggggcaattgtgaaattgccccaacttagatcaattttgttttattt 6606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 6607605 - 6607666
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
6607605 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 6607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 29429558 - 29429500
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    |||||||||||||||| |  |||||| ||||| ||| ||||||||||||||||||||||    
29429558 ggcgagttttagcatgagcaaattgtcaaatttccccatcttagatcaattttgtttta 29429500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 8981121 - 8981260
Alignment:
24 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
8981121 atcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtcttttttga 8981220  T
124 ggcacaggtggtctcnnnnnnngcctgttctgtttatgag 163  Q
    |||| ||||||||||       ||||||||||||||||||    
8981221 ggcataggtggtctctttttttgcctgttctgtttatgag 8981260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 38943090 - 38943240
Alignment:
167 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 266  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
38943090 gagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 38943189  T
267 accctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
38943190 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 38943240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 19033712 - 19033580
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
19033712 ggcgagttttagcatggagcaattgtgaaattgtcccatcttagatcaattttattttatttgctgttacatgtacaccctacattttatatttcaattt 19033613  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    |||| |||| |||||||||||||||||||||||    
19033612 ataatcctactcaattataatttgactcaaatt 19033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 37922737 - 37922832
Alignment:
201 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 296  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
37922737 atcttagatcaattttgttttatttgctgttatatgtacaccctgcattttatatttcaatttatagtcctactcaattataatttgactcaaatt 37922832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 19033103 - 19033225
Alignment:
163 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaat 261  Q
    ||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||| || |||  ||||||||||| | |||||||||| |||    
19033103 gggcgagttttagcaaggggcaattgtcaaactgccccatcttagatcaattttgttttatttgctattagttgtacatcctgtatttttatattttaat 19033202  T
262 ttataaccctattcaattataat 284  Q
    |||||  | |||||| |||||||    
19033203 ttatagtcatattcatttataat 19033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 37923546 - 37923425
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||||||| |||||    
37923546 ggcgagttttagcatggggcaattgtcaaatttccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttatattccaatt 37923447  T
263 tataaccctattcaattataat 284  Q
    |||| || |||| | |||||||    
37923446 tatagccatatttacttataat 37923425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 2332379 - 2332263
Alignment:
169 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgc-attttatatttcaatttataa 267  Q
    ||||||||||||||||||||| ||||| | | |||||| |||||||||||||||||| || |||  |||||||||| | |||||||||| |||||||||     
2332379 gttttagcatggggcaattgttaaattgctccatcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatattccaatttatag 2332280  T
268 ccctattcaattataat 284  Q
    | ||||| |||||||||    
2332279 ctctatttaattataat 2332263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 38943719 - 38943594
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 258  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||     |||  |||||||| |||| ||||||||| |    
38943719 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattaattaattgtacatcttgcatttttatattcc 38943620  T
259 aatttataaccctattcaattataat 284  Q
    |||||||| || |||||| |||||||    
38943619 aatttatagccatattcatttataat 38943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 2331443 - 2331504
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
2331443 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 2331504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 10361105 - 10361047
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
10361105 ggcgagttttagcatgggcaaattgtcaaattttcccatcttagatcaattttgtttta 10361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 179 - 313
Target Start/End: Complemental strand, 13648561 - 13648427
Alignment:
179 ggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaat 278  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || || | |||    
13648561 ggggcaattgtgaaattgccccatcttagatcaattttgttttatttcctgttacatgtacaccctgcattttatatttcaatttatagccgtacttaat 13648462  T
279 tataatttgactcaaatttacttgtaaatacatta 313  Q
    |||||||||||||||||||||||||| ||||||||    
13648461 tataatttgactcaaatttacttgtatatacatta 13648427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 10030611 - 10030479
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
10030611 ggcgagttttagcatgggacaattgtgaaattgccccatcttagatcaattttgttttatttgatgttacatgtacaccctgcattttatattctaattt 10030512  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    ||| ||||| |||||||||||||||||||||||    
10030511 atagccctactcaattataatttgactcaaatt 10030479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 51800951 - 51801105
Alignment:
164 ggcgagttttagcatggggcaa-ttgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 262  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
51800951 ggcgagttttagcatgaggcaaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatatttcaatt 51801050  T
263 tataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 313  Q
    |||| || |||| |||||||||||||||||||||    ||||||| |||||||||    
51801051 tatagccttatttaattataatttgactcaaattaatttacttgttaatacatta 51801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 27042985 - 27043137
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
27042985 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatactccaattt 27043084  T
264 ataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 313  Q
    ||| ||||| |||||| ||||||||||||||||    ||||| |||||||||||    
27043085 atagccctactcaatt-taatttgactcaaattaatttacttataaatacatta 27043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 46416033 - 46416186
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    ||||||||||||||||||||||||    |||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
46416033 ggcgagttttagcatggggcaatttcacaattgccccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatattccaattt 46416132  T
264 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
46416133 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 46416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 10029994 - 10030115
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
10029994 ggcgagttttagcatggggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10030093  T
263 tataaccctattcaattataat 284  Q
    || |||| ||||||||||||||    
10030094 tacaaccatattcaattataat 10030115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 10257717 - 10257838
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
10257717 ggcgagttttagcatgaggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10257816  T
263 tataaccctattcaattataat 284  Q
    ||||||| ||||||||||||||    
10257817 tataaccatattcaattataat 10257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 38507909 - 38507781
Alignment:
189 tgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttga 288  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||| |||||||||  |||| |||||||||||||||    
38507909 tgaaattgccccatcttagatcaattttgttttatttgctgttacatttacaccttacattttatattccaatttatagtcctactcaattataatttga 38507810  T
289 ctca----aatttacttgtaaatacatta 313  Q
    ||||    |||||||||||||||||||||    
38507809 ctcaaattaatttacttgtaaatacatta 38507781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 10181347 - 10181468
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    ||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||||||||| |||  ||||||||||| | ||||||||| |||||    
10181347 ggcgagttttagcatggggcagttgtcaaattgctccatcttagatcaattttgttttatttactattagttgtacatcctgaatttttatattccaatt 10181446  T
263 tataaccctattcaattataat 284  Q
    ||||||  |||||| |||||||    
10181447 tataacaatattcatttataat 10181468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 10124915 - 10125036
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||| |||| |||||||||| |||||  ||||| ||||||||||||| |||||||| || |||  ||||||||||| | ||||||||| |||||    
10124915 ggcgagttttggcattgggcaattgtcaaattgtcctattttagatcaattttattttatttgctattagttgtacatcctgaatttttatattccaatt 10125014  T
263 tataaccctattcaattataat 284  Q
    ||||||| ||||||||||||||    
10125015 tataaccatattcaattataat 10125036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 51801550 - 51801429
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||  | |||  ||||||| ||||| ||||| ||| |||||    
51801550 ggcgagttttagcatgggacaattgtcaaattactcaatcttagatcaattttgttttatttgttattaattgtacattctgcatttttacattccaatt 51801451  T
263 tataaccctattcaattataat 284  Q
    |||| || |||||| |||||||    
51801450 tatagccatattcatttataat 51801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 13647689 - 13647750
Alignment:
163 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatt 224  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
13647689 gggcgagttttaacatggggcaattgtcaaattgccccatcttagatcaattttgttttatt 13647750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 33464155 - 33464269
Alignment:
171 tttagcatgggg-caattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 269  Q
    |||||||||||| |||| || ||||| ||| |||||| |||||||||||||||||| || |||  |||||||||| |||||||||||  |||||||| |     
33464155 tttagcatgggggcaatcgttaaattgccccatcttaaatcaattttgttttatttgctattagttgtacatcctacattttatattctaatttatacct 33464254  T
270 ctattcaattataat 284  Q
     |||| |||||||||    
33464255 ttatttaattataat 33464269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 38506981 - 38507084
Alignment:
163 gggcgagttttagcatggggcaattgtga-aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaa 260  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||| || |||  ||| || |||||| ||||||||| |||    
38506981 gggcgagttttagcatggggcaatt-tgacaattgccccatctaagatcaattttgttttatttgctattagttgtccaccctgcatttttatattccaa 38507079  T
261 tttat 265  Q
    |||||    
38507080 tttat 38507084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 27043971 - 27043912
Alignment:
166 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||| ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||    
27043971 cgagatttagtatggggtaattgtcaaattgccctatcttagatcaattttgttttattt 27043912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 33465014 - 33464956
Alignment:
167 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||||||    
33465014 gagttttagcatggggcaattgtcaaattgccccaacttagatcaattttattttattt 33464956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34266839 - 34266893
Alignment:
168 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||  |||||| ||||| ||| ||||||||||||||||||||||    
34266839 agttttagcatgggcaaattgtcaaatttccccatcttagatcaattttgtttta 34266893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 46961727 - 46961671
Alignment:
166 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||||  |||||| |||||  || |||||||||||||||| |||||    
46961727 cgagttttagcatgggtgaattgtcaaattttcccatcttagatcaattttatttta 46961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 43139149 - 43139281
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
43139149 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaattt 43139248  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    ||| || || ||||||||||||||| |||||||    
43139249 atagccatactcaattataatttgattcaaatt 43139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 21571042 - 21570910
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  ||||| ||||||| |||| ||||||||||| |||||    
21571042 ggcgagttttagcatggggcatttgtgaaattgccctattttagatcaattttgttttatttgttgttatatgtacaccctgtattttatattttaattt 21570943  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    |||  |||| |||||||||||||||||||||||    
21570942 atagtcctactcaattataatttgactcaaatt 21570910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 21570416 - 21570537
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
21570416 ggcgagttttagtatggggcaattgtcaaattgcccaatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 21570515  T
263 tataaccctattcaattataat 284  Q
    ||||||| |||| | |||||||    
21570516 tataaccatatttatttataat 21570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 42840446 - 42840504
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    ||||||||||||||||||  |||||| ||||| | | ||||||||||||||||||||||    
42840446 ggcgagttttagcatgggcaaattgtcaaatttctccatcttagatcaattttgtttta 42840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 45376267 - 45376207
Alignment:
162 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 222  Q
    |||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||||||||||    
45376267 agggcgagttttagtatgggcaaattatcaaatttccccatcttagatcaattttgtttta 45376207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 7475025 - 7475157
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| | || ||||||||||  |||||    
7475025 ggcgagttttagcatggggcaattatgaaattaccccatcttagattaattttgttttatttgctgttacatatacaccatgtattttatattctaattt 7475124  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    ||||||||||| |||||||||||||||||||||    
7475125 ataaccctatttaattataatttgactcaaatt 7475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 28870467 - 28870317
Alignment:
167 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 266  Q
    |||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
28870467 gagttttagcatggggtaattgtgaaattgctccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 28870368  T
267 accctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
28870367 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 28870317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 313
Target Start/End: Complemental strand, 47514484 - 47514338
Alignment:
163 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 262  Q
    ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||    
47514484 gggcgagttttagcatggggcaattg--------ccccatcttagatcaattttgttttatttgctgttacatgtacaccctgcattttatattctaatt 47514393  T
263 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    ||||  | || |||||| ||||||||||||    |||||||||||||||||||||    
47514392 tatagtcatactcaattgtaatttgactcaaattaatttacttgtaaatacatta 47514338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 28869836 - 28869961
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 258  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||    ||||  |||||||| |||| ||||||||| |    
28869836 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttaattgtacatcttgcatttttatattcc 28869935  T
259 aatttataaccctattcaattataat 284  Q
    |||||||| || |||||| |||||||    
28869936 aatttatagccatattcatttataat 28869961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 47513543 - 47513664
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 262  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||| |||||||||    
47513543 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttacatttcaatt 47513642  T
263 tataaccctattcaattataat 284  Q
    |||| || |||| | |||||||    
47513643 tatagccatatttatttataat 47513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 44185862 - 44185801
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||||||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||    
44185862 ggcgagttttagcatggggcaattgtcaaattgtcccatcttagatcaattttattttattt 44185801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 163 - 313
Target Start/End: Complemental strand, 38826027 - 38825873
Alignment:
163 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 262  Q
    ||||||||||| ||||||||| ||||||||||| |   ||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||    
38826027 gggcgagtttttgcatggggcgattgtgaaattgcttcatcttagataaattttgttttatttgatgttacatgtacaccctgcattttatatttcaatt 38825928  T
263 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 313  Q
    |||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
38825927 tatagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 38825873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 40133796 - 40133670
Alignment:
170 ttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 269  Q
    |||||||| |||||| |||||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||    
40133796 ttttagcacggggcagttgtgaaattgccccatcttaaatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaatttatagcc 40133697  T
270 ctattcaattataatttgactcaaatt 296  Q
    ||| ||||||||||||||| |||||||    
40133696 ctactcaattataatttgattcaaatt 40133670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 1156131 - 1156253
Alignment:
163 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcct-gcattttatatttcaat 261  Q
    ||||| ||||||||||||||||||||| |||||   | |||||| |||||||||||||||||| || |||  ||||||| ||   |||||||||||||||    
1156131 gggcgggttttagcatggggcaattgttaaattgttccatcttaaatcaattttgttttatttgctattaattgtacattctataattttatatttcaat 1156230  T
262 ttataaccctattcaattataat 284  Q
    ||||| | ||||| |||||||||    
1156231 ttatagctctatttaattataat 1156253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 1157004 - 1156930
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 238  Q
    |||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| || |||| ||||    
1157004 ggcgagttttagcatgggacaattgtgaaattatcccaacttagatcaattttgttttatttgctattacttgta 1156930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 2283628 - 2283702
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 238  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||| || |||| ||||    
2283628 ggcgagttttagcatggagcaattgtgaaattgccccaacttagatcaattttgttttatttgctattacttgta 2283702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 2285641 - 2285557
Alignment:
201 atcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataaccctattcaattataat 284  Q
    |||||| |||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||| | ||||| |||||||||    
2285641 atcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatatttcaatttatagctctatttaattataat 2285557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 40129171 - 40129232
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||| |||||||||||||| |||||| ||||| | | |||||||||||||||| ||||||||    
40129171 ggcgtgttttagcatggggtaattgtcaaattgctccatcttagatcaattttcttttattt 40129232  T

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Target: scaffold0022 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 60473 - 60341
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| || ||||||||||| | || ||||||||||  |||||    
60473 ggcgagttttagcatggggcaattgtcaaattgctccatcttagatcaattttgttttatttgctattacatgtacaccttgtattttatattctaattt 60374  T
264 ataaccctattcaattataatttgactcaaatt 296  Q
    |||  |||| |||||||||||||||||||||||    
60373 atagtcctactcaattataatttgactcaaatt 60341  T

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Target: scaffold0072 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 16237 - 16357
Alignment:
164 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 263  Q
    |||| |||||||||| || ||||||| |||||   | ||||||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||||    
16237 ggcgggttttagcataggacaattgttaaattggtccatcttagatcaattttgttttatttgctactagctgtacatcctacattttatatttcaattt 16336  T
264 ataaccctattcaattataat 284  Q
    ||| | ||||| |||||||||    
16337 atagctctatttaattataat 16357  T

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Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 17104 - 17041
Alignment:
162 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 225  Q
    |||| ||||||||||||||| ||||||||||||| ||  | |||||||||||||||||||||||    
17104 agggtgagttttagcatgggacaattgtgaaattgcctcaacttagatcaattttgttttattt 17041  T

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