View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19839_low_3 (Length: 671)
Name: NF19839_low_3
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 19 - 653
Target Start/End: Complemental strand, 53802460 - 53801826
Alignment:
| Q |
19 |
catagattatagattaaggctgggtagctccttataatgagaggagcaccgccccatataatacctattattatatatagtccacttaatttttctacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53802460 |
catagattatagattaaggctgggtagctccttataatgagaggagcaccgccccatataatacctattattatatatagtccacttaatttttctacat |
53802361 |
T |
|
| Q |
119 |
ttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaataaacacaaggcatcttgatctttactt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53802360 |
ttgttaaattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaataaacacaaggcatcttgatctttactt |
53802261 |
T |
|
| Q |
219 |
taaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccagatgagaagttactttttctccactaacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53802260 |
taaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccagatgagaagttactttttctccactaacta |
53802161 |
T |
|
| Q |
319 |
atggtgatgaaattttgttcatgctcaaacactttactttactaatcaatactttacacacaagcttttagctatctttctagcacaaatcaacaaaagc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53802160 |
atggtgatgaaattttgttcatgctcaaacactttactttactaatcaatactttacacacaagcttttagctatctttctagcacaaatcaacaaaagc |
53802061 |
T |
|
| Q |
419 |
tcttctctgacgtgaaaatgagtcacccggttatacattgaaaaggaaacatgctttgcatacgtaatatcctttaaccataccacctaatcctttcaat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53802060 |
tcttctctgacgtgaaaatgagtcacccggttatacattgaaaagggagcatgctttgcatacgtaatatcctttaaccataccacctaatcctttcaat |
53801961 |
T |
|
| Q |
519 |
tcaagttgtagtaaataacttaagattcttgcaagcttcaaaagccatgtttttaaaaatgtgctcattaaagttgtgacaaaaatcttttagacaccca |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53801960 |
tcaagttgtagtaaataacttaagattcttgtaagcttcaaaagccatgtttttaaaaatgtgctcattaaagttgtgacaaaaatcttttagacaccca |
53801861 |
T |
|
| Q |
619 |
ttccttcaagggacccacaccagttctttcagaga |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
53801860 |
ttccttcaagggacccacaccagttctttcagaga |
53801826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 41781533 - 41781270
Alignment:
| Q |
92 |
tatatagtccacttaatttttctacatttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaat |
191 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41781533 |
tatatagtccacttaacttctctacatttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtatgaat |
41781434 |
T |
|
| Q |
192 |
aaacacaaggcatcttgatctttactttaaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccagat |
291 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41781433 |
aaagacaaggcatcttgatctttgctttaaactttttgattac-ttggaatccttaaagtgttactaactatataaaatcccacttagatgaagccagat |
41781335 |
T |
|
| Q |
292 |
gagaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttact |
356 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41781334 |
gaaaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttact |
41781270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 41780558 - 41780430
Alignment:
| Q |
371 |
tttacacacaagcttttagctatctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttatacattgaaaaggaaacat |
470 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |
|
|
| T |
41780558 |
tttacacacaagcttttaactagctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttagatattgaaaaggaagcat |
41780459 |
T |
|
| Q |
471 |
gctttgcatacgtaatatcctttaaccat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41780458 |
gctttgcatacgtaatatcctttaaccat |
41780430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University