View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_4 (Length: 666)
Name: NF19839_low_4
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 281 - 652
Target Start/End: Original strand, 43360841 - 43361214
Alignment:
| Q |
281 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
380 |
Q |
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| T |
43360841 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
43360940 |
T |
|
| Q |
381 |
cgaaggtgatgttgtannnnnnnaatagtgttaattgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
480 |
Q |
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| T |
43360941 |
cgaaggtgatgttgtatttttttaatagtgttatttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
43361040 |
T |
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| Q |
481 |
aacatagagtggaaattaccacatttgatctttgctttatgcattattgctcacttgttggcaactgaagaagtagttaaca--atgacataaacataca |
578 |
Q |
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| T |
43361041 |
aacatagagtggaaattaccacatttgatctttgctttatgtattattgctcacttgttggcaactgaagaagtagttaacaatatgacataaatataca |
43361140 |
T |
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| Q |
579 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcat |
652 |
Q |
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| T |
43361141 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcat |
43361214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 43360585 - 43360844
Alignment:
| Q |
1 |
actgcctaataactactgaaattaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggttacggtgacttctgctctg |
100 |
Q |
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| T |
43360585 |
actgcctaataactactgaaagtaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggttacggtgacttctgctctg |
43360684 |
T |
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| Q |
101 |
tgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctcttcaa |
200 |
Q |
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| T |
43360685 |
tgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctcttcaa |
43360784 |
T |
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| Q |
201 |
acaatttcgtgaaaaataaaaactgtaaatgtcaagctcacttgaacttggccaaatatc |
260 |
Q |
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| T |
43360785 |
acaatttcgtgaaaaataaaagctgtaaatgtcaagctcacttgaacttggccaaatatc |
43360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 49414504 - 49414351
Alignment:
| Q |
142 |
tttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctctt------------caaacaatttcgtgaa-aaataaaaactgtaa |
228 |
Q |
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| T |
49414504 |
tttgctaacacttaagattttttacattgcacatttgcactgtcatatttcatcttgatgctgtcaagcaaagaattttgtaaataaataaaacccataa |
49414405 |
T |
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| Q |
229 |
atgtcaagctcacttgaacttggccaaatatcaattgttagcctttagcaagta |
282 |
Q |
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| T |
49414404 |
atatcaagctcacttgaacttagccaaatatcaatctttagcctttagcaagta |
49414351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 498
Target Start/End: Complemental strand, 49414301 - 49414126
Alignment:
| Q |
323 |
agctgctactattgtcattggaggaaaacttgcagtactctaacatgtc--atgtcctttcgaaggtgatgttgtannnnnnnaatagtgttaattgttg |
420 |
Q |
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|||| ||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||| | |||||||||||| |||| || |||||| |
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| T |
49414301 |
agctactactattgtcattggaagaaagtttgtagtaccctaacatgtcatatgtcctttaggtggtgatgttgta-taattgaatattg----ttgttg |
49414207 |
T |
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| Q |
421 |
tgtattgatattcaagctgtgatttacctcgaagtatttgagccatgat-tgt--gttagttaaacatagagtggaaatta |
498 |
Q |
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|||| |||||||||||||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||| |
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| T |
49414206 |
tgtaatgatattcaagctgtgatttacttcaaagtatttgagacatgatgtgttaattagttcgacatagagtggaaatta |
49414126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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