View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_40 (Length: 265)
Name: NF19839_low_40
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 35369666 - 35369429
Alignment:
| Q |
17 |
tttggtcatccctgcaaatgtccacacacaatcaaaaccctaatagatagataaaaaacattataattaattttgatctatttgaagataaaatcatcat |
116 |
Q |
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| T |
35369666 |
tttggtcatccctgcaaatgtccacacacaatcaaaaccctaatagttagataaaaaaaattataattaattttgatctattttaagataaaatcatcat |
35369567 |
T |
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| Q |
117 |
tatattatcaatggagatatataaannnnnnnnnngaataaaatcatcaatggatcatatttatatagcctctatttaattaattaagaaagagaaatat |
216 |
Q |
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| T |
35369566 |
tatattatcaatggagatatataa---tttttttttaat-aaatcatcaatggatcatatttatatagcctctat----ttaattaagaaagacaaatat |
35369475 |
T |
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| Q |
217 |
ttaaaggcaatttaaaatttggaattaaccaattggtttctctatc |
262 |
Q |
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| T |
35369474 |
ttaaaggcaatttagaatttggaattaaccaattggtttctctatc |
35369429 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 19632496 - 19632541
Alignment:
| Q |
177 |
ttatatagcctctatttaattaattaagaaagagaaatatttaaag |
222 |
Q |
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| T |
19632496 |
ttatatagcatttatttaattaataaagaaagataaatatttaaag |
19632541 |
T |
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