View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_45 (Length: 249)
Name: NF19839_low_45
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 39902698 - 39902854
Alignment:
| Q |
88 |
ttcataaactatctcaaagaaactataaaaataagctgagatgagcttatgaacatctaataagctatcttcataagttaaaataagccaatcttaaatc |
187 |
Q |
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| T |
39902698 |
ttcataaactatctcaaagaaactataaaaataagctgagatgagcttatgaacatgtaataagctatcttcataagttaaaataagccaatcttaaatc |
39902797 |
T |
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| Q |
188 |
agttgattagattaacggaaacagcaaaggagagagtaagtacctttgtcctatgct |
244 |
Q |
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| T |
39902798 |
agttgattagattaacggaaacagcaaaggagagagtaagtacctttgtcctctgct |
39902854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39902612 - 39902642
Alignment:
| Q |
1 |
acaaatctttgaaattgataacaaagtagca |
31 |
Q |
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| T |
39902612 |
acaaatctttgaaattgataacaaagtagca |
39902642 |
T |
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