View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19839_low_46 (Length: 246)

Name: NF19839_low_46
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19839_low_46
NF19839_low_46
[»] chr2 (3 HSPs)
chr2 (17-237)||(37401947-37402166)
chr2 (155-189)||(18570996-18571030)
chr2 (155-187)||(34993983-34994015)
[»] chr5 (1 HSPs)
chr5 (17-118)||(42945256-42945366)
[»] scaffold0623 (1 HSPs)
scaffold0623 (19-68)||(5864-5913)
[»] chr6 (2 HSPs)
chr6 (155-189)||(9024177-9024211)
chr6 (157-189)||(7942279-7942311)
[»] chr4 (3 HSPs)
chr4 (156-189)||(18513243-18513276)
chr4 (106-189)||(34589661-34589741)
chr4 (155-187)||(35723385-35723417)
[»] chr1 (1 HSPs)
chr1 (156-189)||(30847722-30847755)
[»] chr7 (3 HSPs)
chr7 (126-183)||(41811668-41811730)
chr7 (155-187)||(4909177-4909209)
chr7 (161-189)||(38134413-38134441)
[»] chr3 (2 HSPs)
chr3 (156-189)||(23144101-23144134)
chr3 (153-185)||(40150570-40150602)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 37401947 - 37402166
Alignment:
Q  17 agaagcagttctgatatgggaatggaagcttttaataaacaggttaactatgtgttttttattttaatcttttatgaactatagatacacctcggattag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37401947 agaagcagttctgatatgggaatggaagcttttaataaacaggttaactatgtgttttttattttaatcttttatgaactatagatacacctcggattag 37402046  T
Q  117 gcgtgtcttgatgtcggatacctatcatgtctgacgcagacactgacacatatgattacattgaattatgtcannnnnnnnaaaattataatcggtgtcg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  37402047 gcgtgtcttgatgtcggatacctatcatgtctgacgcagacactgacacatatgattacattgaattatgtcatttttttt-aaattataatcggtgtcg 37402145  T
Q  217 atttgttcgtgtctgtgctgc 237  Q
    |||||||||||||||||||||    
T  37402146 atttgttcgtgtctgtgctgc 37402166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 18571030 - 18570996
Alignment:
Q  155 gacactgacacatatgattacattgaattatgtca 189  Q
    |||||||||||||||||||||||||||||||||||    
T  18571030 gacactgacacatatgattacattgaattatgtca 18570996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 34993983 - 34994015
Alignment:
Q  155 gacactgacacatatgattacattgaattatgt 187  Q
    ||||||||||||||| |||||||||||||||||    
T  34993983 gacactgacacatataattacattgaattatgt 34994015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 42945366 - 42945256
Alignment:
Q  17 agaagcagttctgatatgggaatggaagcttttaataaacaggttaactatgtgttt---------tttattttaatcttttatgaactatagatacacc 107  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||         || |||||||||||||||||| ||||||||||||    
T  42945366 agaagcagttctgatatgggaattgaagcttttaataaaaaggtcaactatgtgttttctgcttagttaattttaatcttttatgaattatagatacacc 42945267  T
Q  108 tcggattaggc 118  Q
    |||||||||||    
T  42945266 tcggattaggc 42945256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5913 - 5864
Alignment:
Q  19 aagcagttctgatatgggaatggaagcttttaataaacaggttaactatg 68  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5913 aagcagttctgatatgggaatggaaacttttaataaacaggtgaactatg 5864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 9024177 - 9024211
Alignment:
Q  155 gacactgacacatatgattacattgaattatgtca 189  Q
    |||||||||||||||||||||||||||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtca 9024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 7942311 - 7942279
Alignment:
Q  157 cactgacacatatgattacattgaattatgtca 189  Q
    ||||||||||| |||||||||||||||||||||    
T  7942311 cactgacacatgtgattacattgaattatgtca 7942279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 18513243 - 18513276
Alignment:
Q  156 acactgacacatatgattacattgaattatgtca 189  Q
    ||||||||||||||||||||||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtca 18513276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 34589661 - 34589741
Alignment:
Q  106 cctcggattaggcgtgtcttgatgtcggatacctatcatgtctgacgcagacactgacacatatgattacattgaattatgtca 189  Q
    |||||||||||||||| || | |||| ||||| |||| |||| ||| | ||||| |||||||  ||||||||||||||||||||    
T  34589661 cctcggattaggcgtgcctcggtgtcagatacgtatcgtgtccgacactgacac-gacacat--gattacattgaattatgtca 34589741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 35723385 - 35723417
Alignment:
Q  155 gacactgacacatatgattacattgaattatgt 187  Q
    ||||||||||||||| |||||||||||||||||    
T  35723385 gacactgacacatataattacattgaattatgt 35723417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 30847722 - 30847755
Alignment:
Q  156 acactgacacatatgattacattgaattatgtca 189  Q
    ||||||||||||||||||||||||||||||||||    
T  30847722 acactgacacatatgattacattgaattatgtca 30847755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 41811730 - 41811668
Alignment:
Q  126 gatgtcggatacctatcatgtctgacgca-----gacactgacacatatgattacattgaatt 183  Q
    |||||||||||| ||||||||||||| |      |||||||||||||||||||||||||||||    
T  41811730 gatgtcggatacatatcatgtctgacaccaacacgacactgacacatatgattacattgaatt 41811668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 4909209 - 4909177
Alignment:
Q  155 gacactgacacatatgattacattgaattatgt 187  Q
    |||||||||||||||||||||| ||||||||||    
T  4909209 gacactgacacatatgattacaatgaattatgt 4909177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 38134413 - 38134441
Alignment:
Q  161 gacacatatgattacattgaattatgtca 189  Q
    |||||||||||||||||||||||||||||    
T  38134413 gacacatatgattacattgaattatgtca 38134441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 23144101 - 23144134
Alignment:
Q  156 acactgacacatatgattacattgaattatgtca 189  Q
    ||||| ||||||||||||||||||||||||||||    
T  23144101 acactaacacatatgattacattgaattatgtca 23144134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 40150570 - 40150602
Alignment:
Q  153 cagacactgacacatatgattacattgaattat 185  Q
    ||||||| |||||||||||||||||||||||||    
T  40150570 cagacaccgacacatatgattacattgaattat 40150602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University