View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_47 (Length: 237)
Name: NF19839_low_47
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 39902319 - 39902112
Alignment:
| Q |
9 |
aagtgcttaaaaatcaaattctttttataactatgtcaacctatttgaactagatagtccattttcaaattttcatataactattgtcaatgttccttga |
108 |
Q |
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| T |
39902319 |
aagtgcttaaaaatcaaattctttttataactatgtcaacctatttgaactagatagtccattttcaaattttcatataattattgtcaatgttccttga |
39902220 |
T |
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| Q |
109 |
gacaatatattgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaactcaaa |
208 |
Q |
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| T |
39902219 |
gacaatatgttgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaactcaaa |
39902120 |
T |
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| Q |
209 |
ggcttaca |
216 |
Q |
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|||||||| |
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| T |
39902119 |
ggcttaca |
39902112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 39901915 - 39901962
Alignment:
| Q |
134 |
caattaagagtcgttctacagtgcagcgagacaatgtgcattatatta |
181 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||| |||||| |
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| T |
39901915 |
caattaagagtcgtcctacagtgcagcaagacaatgtgcatgatatta |
39901962 |
T |
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