View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_5 (Length: 662)
Name: NF19839_low_5
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 67 - 395
Target Start/End: Complemental strand, 36545728 - 36545400
Alignment:
| Q |
67 |
aacaaatcctaagtttaatgaaataacaatatataattttctcactttatactttactcactttacacgagccaaattcatcaatcaccaaacaatgacg |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36545728 |
aacaaatcctaagtttaatgaaataacaatatataattttctcactttatactttactcactttacacgagccaaattcatcaatcaccgaacaatgacg |
36545629 |
T |
|
| Q |
167 |
aaatgaacaatgaactcaatacaagccgaactcaaatttaaaagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagnnnnnnngaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36545628 |
aaatgaacaatgaactcaatacaagccgaactcaaatttaaaagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagaaaaaaagaa |
36545529 |
T |
|
| Q |
267 |
taagaatagacacacaaagtatgcatgctacgttgtttccttaaaattgggaaaggaacattttccacaagacccttttctacgatcattgtcacataaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36545528 |
taagaatagacacacaaagtatgcatgctacgttgtttccttaaaattgggaaaggaacattttccacaagacccttttctacgatcattgtcacataaa |
36545429 |
T |
|
| Q |
367 |
tgaaacacatacacaaatagaacatctac |
395 |
Q |
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| T |
36545428 |
tgaaacacatacacatatagaacatctac |
36545400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 493 - 654
Target Start/End: Complemental strand, 36545301 - 36545140
Alignment:
| Q |
493 |
taataaaaggagaaagagagagagaaccatatattaatgttgataatgaggagaatgcaaatgattcttctattccatgtagcatgaaattcagtgagac |
592 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36545301 |
taataaaaggagaaagagagacagaaccatatattaaggttgataatgaggagaatgcaaatgattcttctattccatgtagcatgaaattcagtgagac |
36545202 |
T |
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| Q |
593 |
agtgtgtgcgtaacgttggatttgtaccaaaacattataacagcggtttcatttcatctcac |
654 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36545201 |
agtgtgtgcgtaacgttggatttgtaccaaaacattataacagcggtttcatttcatttcac |
36545140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 36545747 - 36545716
Alignment:
| Q |
18 |
gatactgcaagtatatcgtaacaaatcctaag |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36545747 |
gatactgcaagtatatcgtaacaaatcctaag |
36545716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 35229458 - 35229429
Alignment:
| Q |
102 |
attttctcactttatactttactcacttta |
131 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35229458 |
attttctcactttatactttactcacttta |
35229429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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