View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_50 (Length: 232)
Name: NF19839_low_50
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 32885032 - 32884826
Alignment:
| Q |
19 |
ggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgtt-ggtggaagaataatgtatattttccaaaatgacactgaagat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885032 |
ggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttcggtggaagaataatgtatattttccaaaatgacactgaagat |
32884933 |
T |
|
| Q |
118 |
aattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaggaggagattctatatcaaaaagacatatgaatgcctttatacat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32884932 |
aattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaggaggagattctatataaaaaagacatatgaatgcctttatacat |
32884833 |
T |
|
| Q |
218 |
attcttc |
224 |
Q |
| |
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||||||| |
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|
| T |
32884832 |
attcttc |
32884826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 32899075 - 32898869
Alignment:
| Q |
19 |
ggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaagaataatgtatattttccaaaatgacactgaagata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32899075 |
ggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaagaataatgtatattttccaaaatgacactgaagata |
32898976 |
T |
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| Q |
119 |
attaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatatcaaaaagacatatgaatgcctttatacat |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
32898975 |
attaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgactttatacac |
32898876 |
T |
|
| Q |
218 |
attcttc |
224 |
Q |
| |
|
||||||| |
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|
| T |
32898875 |
attcttc |
32898869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 32880203 - 32879997
Alignment:
| Q |
19 |
ggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaagaataatgtatattttccaaaatgacactgaagata |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32880203 |
ggaaagaggtgactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaagaataatgtttattttccaaaatgacactgaagata |
32880104 |
T |
|
| Q |
119 |
attaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatatcaaaaagacatatgaatgcctttatacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
32880103 |
attaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgactttatacat |
32880004 |
T |
|
| Q |
218 |
attcttc |
224 |
Q |
| |
|
||||||| |
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|
| T |
32880003 |
attcttc |
32879997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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