View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_56 (Length: 211)
Name: NF19839_low_56
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 44865321 - 44865514
Alignment:
| Q |
9 |
agaatatgaagcaaaccggcaaaaagaagaaacttttgtcagatttaatgtctgagaagaactcctggaatctaaagggcgaatgtatgccagaaaagaa |
108 |
Q |
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| T |
44865321 |
agaatatgaagcaaaccggcaaaaagaagaaacttttgtcagatttaatgtctgagaagaactcctggaatctaaagggcgaatgtatgccagaaaagaa |
44865420 |
T |
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| Q |
109 |
ggctgatgataattcaatttcacggtgtgcgaggaaacagaaggcagctcatgatactaatgaatatttccatcattcccaaattgctgatgat |
202 |
Q |
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| T |
44865421 |
ggctgatgataattcaatttcacggtgtgcgaggaaacagaaggcagctcacgatactaatgaatatttccatcattcccaaattgctgatgat |
44865514 |
T |
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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 28753521 - 28753326
Alignment:
| Q |
10 |
gaatatgaagcaaaccggcaaaaagaagaaacttttgtcagatttaatgtctgagaagaactcctggaatctaaagggcgaatgtatgccagaaaagaag |
109 |
Q |
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| T |
28753521 |
gaatacgaagcagactggcaaaaagaaaaaacttttgtcagatttaatgtctgaggagaacgtctggactccaaatggtgaatgtataccaaaaaagaaa |
28753422 |
T |
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| Q |
110 |
gctgatgataattcaatttcacggtgtgcgaggaaacagaaggcagctcatgatact---aatgaatatttccatcattcccaaattgctgatgat |
202 |
Q |
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| T |
28753421 |
gctggtggtagttcaatttcacgacgtggcaggaaacggaaggcagcgtatgatacttcatatgattattttcatcattcccaaattgctgatgat |
28753326 |
T |
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