View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_59 (Length: 205)
Name: NF19839_low_59
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 4183030 - 4182858
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183030 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
4182931 |
T |
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| Q |
117 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttat |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4182930 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttat |
4182858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 4743874 - 4743702
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4743874 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
4743775 |
T |
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| Q |
117 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttat |
189 |
Q |
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| T |
4743774 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttat |
4743702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 51756779 - 51756615
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||| |
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| T |
51756779 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatcattatatctatacc------aaaccattatatatttctgaggatga |
51756686 |
T |
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| Q |
117 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatactt |
187 |
Q |
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||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||| |
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| T |
51756685 |
ccaagtgctgatgtattttgtgaagaggggaaaatttagtttggctttctatgattccataaatgatactt |
51756615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 51762961 - 51762791
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | ||| |||||| || |||||||||| ||||| |||| |
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| T |
51762961 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttattccttaaccaaggcattatatatatctgaagatga |
51762862 |
T |
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| Q |
117 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatactt |
187 |
Q |
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| T |
51762861 |
ccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatgatactt |
51762791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 51854963 - 51855139
Alignment:
| Q |
11 |
aagaaaatggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctga |
110 |
Q |
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||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||| ||||| |
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| T |
51854963 |
aagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctga |
51855062 |
T |
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| Q |
111 |
gcatgaccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatactt |
187 |
Q |
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||||||||||||||| ||||||| | |||| | |||| |||||||||||||||||||||||||| ||||||||| |
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| T |
51855063 |
agatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactt |
51855139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 51858628 - 51858796
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatga |
116 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||| | | | ||||||| || ||| ||||||||| ||||| ||| |
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| T |
51858628 |
atggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctataccaaagtattatatatatctgaagatgg |
51858727 |
T |
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| Q |
117 |
ccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatac |
185 |
Q |
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|| | ||||||| |||||| | ||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
51858728 |
cctaatgctgatatattttttcaagagagggaaatttaggttggctgtctatgattccattaatgatac |
51858796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 51782821 - 51782869
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctcaaatggg |
65 |
Q |
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||||||||| ||||||||||| |||||| |||||||||||| ||||||| |
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| T |
51782821 |
atggaaatgaacaatcttggaataaattattaagtgttcctaaaatggg |
51782869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 51832389 - 51832448
Alignment:
| Q |
11 |
aagaaaatggaaatggacaatcttggactaaattgttaagtgttcctcaaatgggagatg |
70 |
Q |
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||||| ||||||||| ||||||||||||||||||||| || ||||||| |||| ||||| |
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| T |
51832389 |
aagaatatggaaatgaacaatcttggactaaattgttgagcattcctcatatggaagatg |
51832448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 51407588 - 51407546
Alignment:
| Q |
17 |
atggaaatggacaatcttggactaaattgttaagtgttcctca |
59 |
Q |
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|||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
51407588 |
atgggaatgaacagtcttggactaaattgttaagtgttcctca |
51407546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 51381403 - 51381314
Alignment:
| Q |
98 |
tatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatactt |
187 |
Q |
| |
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|||||||||| || |||||||||| ||||| | ||| | |||| | ||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
51381403 |
tatatatttcggaagatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtctatgattccaaaaatgatactt |
51381314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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