View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_6 (Length: 644)
Name: NF19839_low_6
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 281 - 638
Target Start/End: Original strand, 35449459 - 35449816
Alignment:
| Q |
281 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataatgaagattgcgattgtaacttccctcatttcatttgtgtatctcgttaactacta |
380 |
Q |
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| T |
35449459 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataataaagattgcgattgtaacttcactcatttcatttgtgtatcttgttaactacta |
35449558 |
T |
|
| Q |
381 |
catctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacaaatacaagaagaaaaaagtcatcatatctc |
480 |
Q |
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| T |
35449559 |
catctttttatcatgtctatagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacgaatacaagcagaaaaaagtcatcata-ctc |
35449657 |
T |
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| Q |
481 |
ttttatggtaggcgcaccgtggcacataagaaacaaagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtg-nnnnnnnnn |
579 |
Q |
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| T |
35449658 |
ttttatggtaggcgcaccgtggcacataagaaccagagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtgaaaaaaaaaa |
35449757 |
T |
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| Q |
580 |
ggacttgataccgatgaaaaacacaatctagtgaaaacggtgaaaacaatattcttgga |
638 |
Q |
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| T |
35449758 |
ggacttgataccgatgaaaaacacaatctagtgaaaacggtgaaaacaatatttttgga |
35449816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 35449206 - 35449465
Alignment:
| Q |
1 |
ttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctg |
100 |
Q |
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| T |
35449206 |
ttggatattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttg |
35449305 |
T |
|
| Q |
101 |
agcagacacgtcaaccataccaaacaatgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagacct |
200 |
Q |
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| T |
35449306 |
agcagacacgtcaaccataccaaacgatgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagacct |
35449405 |
T |
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| Q |
201 |
tcagcaggttgcacagacacataatagcatgctggattctcagttgctgtaaaacaaaat |
260 |
Q |
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| T |
35449406 |
tcagcaggttgcacagacacataatagcatgctggattctcagttgctgtaaaacaaaat |
35449465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 35448975 - 35449094
Alignment:
| Q |
1 |
ttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctg |
100 |
Q |
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| T |
35448975 |
ttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatg |
35449074 |
T |
|
| Q |
101 |
agcagacacgtcaaccatac |
120 |
Q |
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| T |
35449075 |
agcagacatatcaaccatac |
35449094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 447
Target Start/End: Original strand, 35441307 - 35441377
Alignment:
| Q |
377 |
actacatctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaa |
447 |
Q |
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| T |
35441307 |
actacatctttttatcatgtctttggaatagtaactatgtattttgaatttttagaatgatacaagttaaa |
35441377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 35440982 - 35441206
Alignment:
| Q |
28 |
ttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaa |
127 |
Q |
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| T |
35440982 |
ttcccccattaactccttgttgcatacccatgtttgagttctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatga |
35441081 |
T |
|
| Q |
128 |
tgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagaccttcagcaggttgcacagacacataatag |
227 |
Q |
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| T |
35441082 |
tgatcctttgttattaaacagatcagaaaaattggataccacaccatgttgcagattttttgagttcaagccttctggagtttgcacagaaacatgagaa |
35441181 |
T |
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| Q |
228 |
catgctggattctcagttgctgtaa |
252 |
Q |
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| T |
35441182 |
tatgctggattctcaggtactgtaa |
35441206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 35448780 - 35448886
Alignment:
| Q |
34 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
133 |
Q |
| |
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|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| ||||||||| ||| ||||||| |
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| T |
35448780 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatcc |
35448879 |
T |
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| Q |
134 |
accatta |
140 |
Q |
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||||||| |
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| T |
35448880 |
accatta |
35448886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 1865175 - 1865115
Alignment:
| Q |
266 |
atttagagctggaatacaaaatagattgcaattgagctttcaatatcaagtttagaataat |
326 |
Q |
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||||||||| |||| |||||||||||| ||||||| |||| ||||||| |||||||||| |
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| T |
1865175 |
atttagagccggaaaacaaaatagattacaattgaactttgaatatcatacttagaataat |
1865115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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