View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19839_low_9 (Length: 594)
Name: NF19839_low_9
Description: NF19839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19839_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 10 - 580
Target Start/End: Original strand, 37942276 - 37942845
Alignment:
| Q |
10 |
aagaatatactaaccattagagtctaaaggagtcggtaggactaaaatctaattaacaatgtttagtggcaagt--tccatcaagaagttctcatcccat |
107 |
Q |
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| T |
37942276 |
aagaatatactaaccattagagtctgaaggagtcggtaggactaaagtctaattaacaatgtttagtggcaagtcatccatcaagaagttctcatcccat |
37942375 |
T |
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| Q |
108 |
tccccaaaggaattcaaagcatgtgtcgacatacgtttgattgactaaatagaagatagaagtgtttttcggggccc-atttctccaacaaaacattagt |
206 |
Q |
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| T |
37942376 |
tggggaaaggaattcaaagcatgtgtcgacatacgtttgattgactaaatagaagatagaagtgtttttcggggccccatttctccaacaaaacattagt |
37942475 |
T |
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| Q |
207 |
acatctcctatccacaagattttgagctgatagtgatattaagnnnnnnnnnnnnaagaatgcaactaacatatcgaaattgacaccggagaaaatcgaa |
306 |
Q |
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| T |
37942476 |
acatctcctatccacaagattttgagctgatagtgatattaagtttttttt----aagaatgcaactaacatattgaaattgacaccggagaaaatcgaa |
37942571 |
T |
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| Q |
307 |
tttaaaacctcaagaaaaacatattcaaaggtttcaagtcaacaccgcgatgagtttctcttaatggtatttgttccaatgaactctataccaaaactta |
406 |
Q |
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| T |
37942572 |
tttaaaacctcaagaaaaacatattcaaaggtttcaagtcaacaccgcgatgagtttctcttaatggcatttattccaatgaactctataccaaaactta |
37942671 |
T |
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| Q |
407 |
tcttatttttaaataagattccacaacactttcattaggaaagacccattcgtatgtcgattctgattaagaccaattccatcattcatcttagctagaa |
506 |
Q |
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| T |
37942672 |
tcttatttttaaataagattccacaacactttcattaggaaagacccattcgtatgtcgattctgattaagaccaattccatcattcatcttaggtagaa |
37942771 |
T |
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| Q |
507 |
aacaaacattgtagtcctggtccgacaaattgaggtttatgccccttttacgagtctccacacacataacattg |
580 |
Q |
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| T |
37942772 |
aacaaacattgtagtcctggtccgacaaattgaggtttatgcccctcttacgagtctccacacacataacattg |
37942845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 40075744 - 40075708
Alignment:
| Q |
273 |
taacatatcgaaattgacaccggagaaaatcgaattt |
309 |
Q |
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| T |
40075744 |
taacatatcgaaattgacaccgaagataatcgaattt |
40075708 |
T |
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