View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1983_high_7 (Length: 322)

Name: NF1983_high_7
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1983_high_7
NF1983_high_7
[»] chr4 (14 HSPs)
chr4 (8-305)||(26056474-26056783)
chr4 (14-114)||(26085717-26085817)
chr4 (197-305)||(26113325-26113433)
chr4 (31-142)||(26112067-26112178)
chr4 (242-305)||(26090294-26090359)
chr4 (242-286)||(26080475-26080519)
chr4 (142-185)||(26111765-26111808)
chr4 (148-185)||(26085428-26085465)
chr4 (148-185)||(26121292-26121329)
chr4 (109-146)||(26086292-26086329)
chr4 (142-185)||(26128719-26128762)
chr4 (142-184)||(26038287-26038329)
chr4 (142-184)||(26056192-26056234)
chr4 (142-184)||(26067854-26067896)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 26056474 - 26056783
Alignment:
Q  8 gagcagagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacat--tcttgatgggaatatgagaattcatctatacc 105  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26056474 gagcacagatattcagtacttcgactttgaaactgaatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacc 26056573  T
Q  106 tatatatagaaaaaggaatgtgtgattttggagtgatttttacctaatgacttctttgtttctcaatctattacctcaatgaaannnnnnnacttgagtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||       |||||||||    
T  26056574 tatatatagaaaaaggaatgtgtgattttggagtgattttttcctaatgacatctttgtttctcaatctattacctcaatgaaaaaatttcacttgagtc 26056673  T
Q  206 cattatacgataattgaacatgtgc-----atatctcaacgtg---acaccatt--aattgattgggcaaacaattttttaattattaaaagtatacatg 295  Q
    |||||||||||||  ||||||||||     |||  | ||| ||   | |  |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  26056674 cattatacgataaaggaacatgtgcatacgataattgaacatgtgcataaaatttcacttgattgggcaaacaattttttaattattaaaagtatacatg 26056773  T
Q  296 gtgcaattat 305  Q
    ||||||||||    
T  26056774 gtgcaattat 26056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 26085717 - 26085817
Alignment:
Q  14 agatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085717 agatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatata 26085816  T
Q  114 g 114  Q
    |    
T  26085817 g 26085817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 26113325 - 26113433
Alignment:
Q  197 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccattaattgattgggcaaacaattttttaattattaaaagtatacatgg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  26113325 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccattaattgattgggtaaacaattttttaattattaaaagtatgcatgg 26113424  T
Q  297 tgcaattat 305  Q
    |||||||||    
T  26113425 tgcaattat 26113433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 26112067 - 26112178
Alignment:
Q  31 actttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtga 130  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  26112067 actttgaaactgaatttgattgaactactagcctctcaaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtga 26112166  T
Q  131 ttttggagtgat 142  Q
    ||||||| ||||    
T  26112167 ttttggattgat 26112178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 26090294 - 26090359
Alignment:
Q  242 tgacaccattaattgattgggcaaacaattttttaattatt--aaaagtatacatggtgcaattat 305  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||| | |||||||||    
T  26090294 tgacaccattaattgattggccaaacaattttttaattatttaaaaagtatacaagttgcaattat 26090359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 26080475 - 26080519
Alignment:
Q  242 tgacaccattaattgattgggcaaacaattttttaattattaaaa 286  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  26080475 tgacaccattaattgattggccaaacaattttttaattattaaaa 26080519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 26111808 - 26111765
Alignment:
Q  142 tttttacctaatgacttctttgtttctcaatctattacctcaat 185  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26111808 ttttttcctaatgacttctttgtttctcaatctattacctcaat 26111765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 26085465 - 26085428
Alignment:
Q  148 cctaatgacttctttgtttctcaatctattacctcaat 185  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26085465 cctaatgacttctttgtttctcaatctattacctcaat 26085428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 26121329 - 26121292
Alignment:
Q  148 cctaatgacttctttgtttctcaatctattacctcaat 185  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26121329 cctaatgacttctttgtttctcaatctattacctcaat 26121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 26086292 - 26086329
Alignment:
Q  109 atatagaaaaaggaatgtgtgattttggagtgattttt 146  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26086292 atatagaaaaaggaatgtgcgattttggagtgattttt 26086329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 26128762 - 26128719
Alignment:
Q  142 tttttacctaatgacttctttgtttctcaatctattacctcaat 185  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||    
T  26128762 ttttttcctaatgacttctttgcttctcaatccattacctcaat 26128719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 26038329 - 26038287
Alignment:
Q  142 tttttacctaatgacttctttgtttctcaatctattacctcaa 184  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  26038329 ttttttcctaatggcttctttgtttctcaatctattacatcaa 26038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 26056234 - 26056192
Alignment:
Q  142 tttttacctaatgacttctttgtttctcaatctattacctcaa 184  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26056234 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26056192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 26067896 - 26067854
Alignment:
Q  142 tttttacctaatgacttctttgtttctcaatctattacctcaa 184  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26067896 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University