View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1983_low_1 (Length: 831)
Name: NF1983_low_1
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 746; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Complemental strand, 2136605 - 2135800
Alignment:
| Q |
8 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136605 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
2136506 |
T |
|
| Q |
108 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcaccat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2136505 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcac-at |
2136407 |
T |
|
| Q |
208 |
taaactccttcctaactctttaaattcccactttatcatcattcacacacataacacnnnnnnnnnnnnnnnctagtacactacactaaactctactagt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2136406 |
taaactccttcctaactctttaaattcccactttatcatcattcacacacataacacaaaaaagtgaaaaaactagtacactacactaaactctactagt |
2136307 |
T |
|
| Q |
308 |
tctcaagttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagta |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136306 |
tctcaagttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagta |
2136207 |
T |
|
| Q |
408 |
gctgcttgtttatcagaacaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaac |
507 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136206 |
gctgcttgtttatcagagcaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaac |
2136107 |
T |
|
| Q |
508 |
ttcatttacctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaagtatcctacaaaacatcagttcatttcctacatggaatc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136106 |
ttcatttacctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaagtatcctacaaaacatcagttcatttcctacatggaatc |
2136007 |
T |
|
| Q |
608 |
ctatgctgatcactttcatattcatcctaggtttaatcaaactgttcttagtgctgagtttgattcaacttctcaaatttggatggttagaacaaaagaa |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136006 |
ctatgctgatcactttcatattcatcctaggtttaatcaaactgttcttagtgctgagtttgattcaacttctcaaatttggatggttagaacaaaagaa |
2135907 |
T |
|
| Q |
708 |
ggtgattttcagtatttttcaccttggcttattgttgctactggtgaaaatgctgaacctgtttttcctacaattcatggcatggaacattttcatggtc |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2135906 |
ggtgattttcagtatttttcaccttggcttattgttgctactggtgaaaatgctgaacctgtttttcctacaattcatggtatggaacattttcatggtc |
2135807 |
T |
|
| Q |
808 |
ctgttgt |
814 |
Q |
| |
|
||||||| |
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|
| T |
2135806 |
ctgttgt |
2135800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 460 - 540
Target Start/End: Complemental strand, 29857940 - 29857860
Alignment:
| Q |
460 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
540 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||| | ||||||||||| | |||||||| || ||| ||||||||| |
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|
| T |
29857940 |
attgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
29857860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 39839088 - 39839170
Alignment:
| Q |
458 |
tgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
540 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||| ||| | || |||||||| | || ||||| || ||| ||||||||| |
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| T |
39839088 |
tgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactaccta |
39839170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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