View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1983_low_13 (Length: 249)

Name: NF1983_low_13
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1983_low_13
NF1983_low_13
[»] chr1 (3 HSPs)
chr1 (16-215)||(52945741-52945938)
chr1 (16-215)||(52938109-52938306)
chr1 (16-215)||(44513116-44513321)
[»] chr3 (3 HSPs)
chr3 (16-171)||(50718935-50719090)
chr3 (16-171)||(50793758-50793913)
chr3 (114-215)||(47764084-47764184)
[»] chr8 (5 HSPs)
chr8 (16-154)||(9885529-9885669)
chr8 (16-154)||(4969782-4969922)
chr8 (123-215)||(4969937-4970027)
chr8 (123-215)||(9885424-9885514)
chr8 (44-206)||(23830724-23830884)
[»] chr2 (3 HSPs)
chr2 (16-90)||(27534650-27534724)
chr2 (94-154)||(27534752-27534814)
chr2 (126-195)||(27534862-27534929)
[»] chr7 (1 HSPs)
chr7 (150-213)||(2439985-2440048)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 52945741 - 52945938
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||     
T  52945741 ctaatgacgatggtgaagacgattgtgtaacatctaatgtggtttatagagaggtttttcgtaatctttcttaatttatgtcatttgtatgattgaacat 52945840  T
Q  116 atttatagtctttttatttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctatatt 215  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  52945841 atttatagtctttttatttgtatgaatgatgt--aatacactatctttattaccgtactaatgacttattgctatgaaggcttatacaaatttctatatt 52945938  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 52938109 - 52938306
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||     
T  52938109 ctaatgacgatggtgaagacgattgtgtaacatctaatgtggtttatagagaggtttttcgtaatctttcttaatttatgtcatttgtatgattgaacat 52938208  T
Q  116 atttatagtctttttatttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctatatt 215  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  52938209 atttatagtctttttatttgtatgaatgatgt--aatacactatctttattaccatactaatgacttattgctatgaaggcttatacaaatttctatatt 52938306  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 44513116 - 44513321
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttata-------gagaggtttttagtaatctttcttaatccatgtcatttctatgat 108  Q
    |||||||| |||||||||| || |||||||||| ||| ||||||||||       |||| |||||| |||||||| ||||||    ||||||| ||||||    
T  44513116 ctaatgacaatggtgaagacgattgtgtaacgtctaacgtggtttatactttatagagatgtttttcgtaatcttgcttaatatgcgtcatttgtatgat 44513215  T
Q  109 tgaacagatttatagtcttttt-atttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatt 207  Q
    |||| ||||||||| ||||||| |||| ||  ||||||||||  || ||||||||||||||||||||||||| ||||  |||  ||||| ||||||||||    
T  44513216 tgaagagatttatactcttttttatttataccaatgatgtaa--taaactatctttattaccgtactaatgatttatttctacgaagacatatacaaatt 44513313  T
Q  208 tctatatt 215  Q
    ||||||||    
T  44513314 tctatatt 44513321  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 50718935 - 50719090
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||  |||||||||||||||  |||||||| ||||||||||||     
T  50718935 ctaatgacgatggtgaagacgattgtgtaacgtctaatgtggtttatagagaggtttttcataatctttcttaatctgtgtcatttgtatgattgaacat 50719034  T
Q  116 atttatagtc--tttttatttgtatgaatgatgtaaaatacactatctttattaccgt 171  Q
    ||| ||||||  |||||||||||||||| |||||  |||| |||||||||||||||||    
T  50719035 attgatagtctttttttatttgtatgaaagatgt--aatatactatctttattaccgt 50719090  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 50793913 - 50793758
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||  |||||||||||||||  |||||||| ||||||||||||     
T  50793913 ctaatgacgatggtgaagacgattgtgtaacgtctaatgtggtttatagagaggtttttcataatctttcttaatctgtgtcatttgtatgattgaacat 50793814  T
Q  116 atttatagtct--ttttatttgtatgaatgatgtaaaatacactatctttattaccgt 171  Q
    ||| |||||||  ||||||||||||||| |||||  |||| |||||||||||||||||    
T  50793813 attgatagtctttttttatttgtatgaaagatgt--aatatactatctttattaccgt 50793758  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 47764184 - 47764084
Alignment:
Q  114 agatttatagtcttttt-atttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctat 212  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  47764184 agatttatagtcttttttatttgtatgaatgatgtaa--tacactatctttattaccgtactaatgacttactgctatgaagacttatacaaatttctat 47764087  T
Q  213 att 215  Q
    |||    
T  47764086 att 47764084  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 9885669 - 9885529
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||| ||||| ||||||     
T  9885669 ctaatgacgattgtgaagacgattgtgtaacgtctaatgtggtttatagagaggtttttcgtaatctttcttaatctgtgtcatttgtatgactgaacaa 9885570  T
Q  116 atttatagtct--ttttatttgtatgaatgatgtaaaatac 154  Q
    |||||||||||  ||||||||||||||||||||||| ||||    
T  9885569 atttatagtctttttttatttgtatgaatgatgtaatatac 9885529  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 4969782 - 4969922
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacag 115  Q
    ||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||| ||||| ||||||     
T  4969782 ctaatgacgatagtgaagacgattgtgtaacgtctaatgtggtttatagagaggtttttcgtaatctttcttaatctgtgtcatttgtatgactgaacaa 4969881  T
Q  116 atttatagtc--tttttatttgtatgaatgatgtaaaatac 154  Q
    ||||||||||  |||||||||||| ||||||||||| ||||    
T  4969882 atttatagtctttttttatttgtacgaatgatgtaatatac 4969922  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 4969937 - 4970027
Alignment:
Q  123 gtctttttatttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctatatt 215  Q
    |||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||| |||||    
T  4969937 gtctttttatttgtatgaatgatgtaa--tgcactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatatt 4970027  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 9885514 - 9885424
Alignment:
Q  123 gtctttttatttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctatatt 215  Q
    |||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||| |||||    
T  9885514 gtctttttatttgtatgaatgatgtaa--tgcactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatatt 9885424  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 23830724 - 23830884
Alignment:
Q  44 aacgtttaatgtggtttatagagaggtttttagtaatctttcttaatccatgtcatttctatgattgaacagatttatagtctttttatttgtatgaatg 143  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||   |||||||| |||||||||||||||||||| | |||||||| |  ||| |     
T  23830724 aacgtctaatgtggtttatagagaggtttttcgtaatcttttttaatttgtgtcatttgtatgattgaacagatttataatgtttttattggcttgatt- 23830822  T
Q  144 atgtaaaatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaat 206  Q
     | |   ||||||||||||||||| || ||||||||||||| |  |  |||||||||||||||    
T  23830823 -tttgggatacactatctttattatcggactaatgacttattgtaacgaagacttatacaaat 23830884  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 27534650 - 27534724
Alignment:
Q  16 ctaatgacgatggtgaagatgactgtgtaacgtttaatgtggtttatagagaggtttttagtaatctttcttaat 90  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  27534650 ctaatgacgatggtgaagacgattgtgtaacgtctaatgtggtttatagagaggtttttcgtaatctttcttaat 27534724  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 27534752 - 27534814
Alignment:
Q  94 tgtcatttctatgattgaacagatttatagtc--tttttatttgtatgaatgatgtaaaatac 154  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  27534752 tgtcatttgtatgattgaacagatttatagtctttttttatttgtatgaatgatgtaatatac 27534814  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 27534862 - 27534929
Alignment:
Q  126 tttttatttgtatgaatgatgtaaaatacactatctttattaccgtactaatgacttatcgctataaaga 195  Q
    ||||||||||||||||||||||||  | ||||||||||||||  ||||||||||||||| ||||| ||||    
T  27534862 tttttatttgtatgaatgatgtaa--tgcactatctttattattgtactaatgacttattgctatgaaga 27534929  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 2439985 - 2440048
Alignment:
Q  150 aatacactatctttattaccgtactaatgacttatcgctataaagacttatacaaatttctata 213  Q
    |||||||||||||||||| |||||||||||||||| | ||| |||||||||||| |||||||||    
T  2439985 aatacactatctttattatcgtactaatgacttattgttatgaagacttatacatatttctata 2440048  T

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