View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1983_low_15 (Length: 237)
Name: NF1983_low_15
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_15 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2482626 - 2482862
Alignment:
| Q |
1 |
atccagaagaggcaaactttgtcattttctgtcaaatcaaaattagaaagaaaactaaatagcaattataaacttattagtacaaatttgatagcaaaca |
100 |
Q |
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| T |
2482626 |
atccagaagaggcaaactttgtcattttctgtcaaatcaaaattagaaagaaaactaaatagcagttataaacttattagtacaaatttgataacaaaca |
2482725 |
T |
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| Q |
101 |
ttgtcgtgaatttcagcatttttcttaaactaaagatacttgctctaatccaacatgagaattacgtcacaattgatgaaaatgaaccaagttattctta |
200 |
Q |
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| T |
2482726 |
ttgtcgtgaatttcagcatttttcttaaactaaagatacttgctctaatccaccatgagaattacgtcacaattgatgaaaatgaatcaagttattctta |
2482825 |
T |
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| Q |
201 |
tcatagacaaaattttatttttgaaaagaaaaatatc |
237 |
Q |
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| T |
2482826 |
tcatagacacaattttatttttgaaaagaaaaatatc |
2482862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 2478325 - 2478374
Alignment:
| Q |
125 |
ttaaactaaagatacttgctctaatccaacatgagaattacgtcacaatt |
174 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2478325 |
ttaaaccaaagatacttgctctaatccaccatgagaattacgtcacaatt |
2478374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 2485904 - 2485963
Alignment:
| Q |
127 |
aaactaaagatacttgctctaatccaacatgagaattacgtcacaattgatgaaaatgaa |
186 |
Q |
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|||| |||||||||| | |||||||| |||||||||||||| | |||||||||||||||| |
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| T |
2485904 |
aaaccaaagatacttaccctaatccaccatgagaattacgttaaaattgatgaaaatgaa |
2485963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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