View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1983_low_16 (Length: 236)
Name: NF1983_low_16
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 2483322 - 2483104
Alignment:
| Q |
16 |
tcaccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctcaccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483322 |
tcaccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctcaccg |
2483223 |
T |
|
| Q |
116 |
caatattctcgccgtaacggccaccactatcagaggggatcggtttacaatccttgcgttgattagcatagttctgtgcataagcagcaannnnnnnatc |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2483222 |
caatattctcaccgtaacggccaccactatcagaggggatcggtttacaatccttgcgttgattagcatagttctgtgcataagcagcaatttttttatc |
2483123 |
T |
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| Q |
216 |
ccaaacaatttttggaatt |
234 |
Q |
| |
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||||||||||||||||||| |
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| T |
2483122 |
ccaaacaatttttggaatt |
2483104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 2478818 - 2478629
Alignment:
| Q |
16 |
tcaccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctcaccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||| |||| || |||||||||| |
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| T |
2478818 |
tcaccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccaacccttcactgcttgtgtgccacttatgtagccagtgctcaccg |
2478719 |
T |
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| Q |
116 |
caatattctcgccgtaacggccaccactatcagaggggatcggtttacaatccttgcgttgattagcatagttctgtgcataagcagcaa |
205 |
Q |
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| T |
2478718 |
caatattcttgccataacgaccaccaccattggagggtatcggtttacaatccttgcgttgattagcatagttctgtgcataagcagcaa |
2478629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 2470895 - 2470764
Alignment:
| Q |
103 |
ccggtgctcaccgcaatattctcgccgtaacggccaccactatcagaggggatcggtttacaatccttgcgttgattagcatagttctgtgcataagcag |
202 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| | || |||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
2470895 |
ccggtgctcaccgcaatattctcgccataacggccaccactgcctgaagggatctgtttacaatccttgcgtttattagcatagttctgtgcaaaagcag |
2470796 |
T |
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| Q |
203 |
caannnnnnnatcccaaacaatttttggaatt |
234 |
Q |
| |
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||| |||||||||||| ||||||||| |
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| T |
2470795 |
caactttttcatcccaaacaatatttggaatt |
2470764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 2486503 - 2486270
Alignment:
| Q |
13 |
tcatcaccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctca |
112 |
Q |
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|||| |||||||| |||| |||| ||||| || ||||| ||||| ||||||| |||||||||||||||||| ||||| |||| |||||||||| |
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| T |
2486503 |
tcatgaccatcaatacatgagttagcatagtgattaaagtatggttcttcatccacccacaacttcactgcttccgcgccacttatgtagccggtgctca |
2486404 |
T |
|
| Q |
113 |
ccgcaatattctcgccg------------taacggccaccactatcagaggggatcggtttacaatccttgcgttgattagcatagttctgtgcataagc |
200 |
Q |
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|||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| | || |
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| T |
2486403 |
ccgcaatattctcgccaagatactcaccataacggccaccactgcctgaggggatctgtttacaatccttgcgttgattagcatagttctgtgcaaatgc |
2486304 |
T |
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| Q |
201 |
agcaannnnnnnatcccaaacaatttttggaatt |
234 |
Q |
| |
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||||| |||||||||||| ||||||||| |
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| T |
2486303 |
agcaatatcgttatcccaaacaatgtttggaatt |
2486270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 2469916 - 2469766
Alignment:
| Q |
55 |
ggtttttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctcaccgcaatattctcgccgtaacggccaccactatcagagggga |
154 |
Q |
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|||||||||||| ||||||||||||| |||| | ||||| |||| || |||||| |||| |||||||| |||||||||||||||| | ||||| ||| |
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| T |
2469916 |
ggtttttcatccacccacaacttcaccgcttctacgccactcatgttgccagtgctctccgcgatattctctccgtaacggccaccaccaccagagtgga |
2469817 |
T |
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| Q |
155 |
tcggtttacaatccttgcgttgattagcatagttctgtgcataagcagcaa |
205 |
Q |
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| ||| ||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
2469816 |
ccagttgacaatccttgcgttgattagcatagttttttgcaaaagcagcaa |
2469766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 2474086 - 2474043
Alignment:
| Q |
162 |
acaatccttgcgttgattagcatagttctgtgcataagcagcaa |
205 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||| |
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| T |
2474086 |
acaatccttgcgttgattagcataattttgtgcataagcagcaa |
2474043 |
T |
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