View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1983_low_18 (Length: 214)
Name: NF1983_low_18
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_18 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15761985 - 15762186
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15761985 |
ctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaa |
15762084 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtatt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
15762085 |
agatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaatggcacgaatgacaaggacaaaaatggtatt |
15762184 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
15762185 |
tt |
15762186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13342458 - 13342657
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| | ||| ||||| ||||||||||||| |||| |
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|
| T |
13342458 |
ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa |
13342557 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtatt |
200 |
Q |
| |
|
||||||| || | | |||||||||||| || ||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||| || |
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|
| T |
13342558 |
agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaagggcaaaaatggtttt |
13342655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13331543 - 13331742
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| | ||| ||||| ||||||||||||| |||| |
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|
| T |
13331543 |
ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa |
13331642 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtatt |
200 |
Q |
| |
|
||||||| || | | |||||||||||| || ||| |||||||||||||| ||||||||||| ||||||| ||||||||| ||||| |||||||||| || |
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|
| T |
13331643 |
agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaagggcaaaaatggtttt |
13331740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 33430271 - 33430336
Alignment:
| Q |
30 |
aaattagatggtactttgaaaagaatagtgaaa-tcaaaacccaaattagcaaacagttgatgaaca |
95 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| |
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|
| T |
33430271 |
aaattagatggtaccttgaagagaatagtgaaattcaaaatccaaa-tagcaaacacttgatgaaca |
33430336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5672014 - 5672213
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| | ||| ||||| ||||||||||||| |||| |
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|
| T |
5672014 |
ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa |
5672113 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtatt |
200 |
Q |
| |
|
||||||| || | | |||||||||||| || ||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||| || |
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|
| T |
5672114 |
agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaagggcaaaaatggtttt |
5672211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 26661620 - 26661435
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| ||||||||| ||| |||| |
|
|
| T |
26661620 |
ctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa |
26661521 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaagg |
186 |
Q |
| |
|
||||||| || | |||||||| |||| | ||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
26661520 |
agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagg |
26661435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6050025 - 6049931
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaaca |
95 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||||||||| |
|
|
| T |
6050025 |
ctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaaca |
6049931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 21481538 - 21481353
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| |||||||| ||| |||| |
|
|
| T |
21481538 |
ctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaa |
21481439 |
T |
|
| Q |
101 |
agatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgggaatgacaagg |
186 |
Q |
| |
|
||||||| || | |||||||| |||| | ||| |||||||||||||| |||||||||||||||||||| || |||||| ||||| |
|
|
| T |
21481438 |
agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcaggaatggcaagg |
21481353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19701272 - 19701165
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc-aaaacccaaattagcaaacagttgatgaaca-tac |
98 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| ||||||||| ||||| ||||| ||||| ||||||||||||| ||| |
|
|
| T |
19701272 |
ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaat-agcaagcagttgatgaacactac |
19701174 |
T |
|
| Q |
99 |
aaagatcat |
107 |
Q |
| |
|
||||||||| |
|
|
| T |
19701173 |
aaagatcat |
19701165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32717834 - 32717938
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaacagttgatgaaca-tac |
98 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||| ||||| ||||||||||||| ||| |
|
|
| T |
32717834 |
ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaa-cagcaagcagttgatgaacactac |
32717932 |
T |
|
| Q |
99 |
aaagat |
104 |
Q |
| |
|
|||||| |
|
|
| T |
32717933 |
aaagat |
32717938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10637760 - 10637656
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaacagttgatgaaca-tac |
98 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||| ||||| ||||||||||||| ||| |
|
|
| T |
10637760 |
ctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaa-cagcaagcagttgatgaacactac |
10637662 |
T |
|
| Q |
99 |
aaagat |
104 |
Q |
| |
|
|||||| |
|
|
| T |
10637661 |
aaagat |
10637656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9705 - 9598
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaacagttgatgaaca-tac |
98 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||| | ||| ||||||||||||| ||| |
|
|
| T |
9705 |
ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaa-caacaagcagttgatgaacactac |
9607 |
T |
|
| Q |
99 |
aaagatcat |
107 |
Q |
| |
|
||||||||| |
|
|
| T |
9606 |
aaagatcat |
9598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22893915 - 22893808
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaacagttgatgaaca-tac |
98 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||| ||||| ||||||||||||| ||| |
|
|
| T |
22893915 |
ctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaa-cagcaagcagttgatgaacactac |
22893817 |
T |
|
| Q |
99 |
aaagatcat |
107 |
Q |
| |
|
||||||||| |
|
|
| T |
22893816 |
aaagatcat |
22893808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44306241 - 44306148
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaaca |
95 |
Q |
| |
|
||||||||||||||||||||||||| | ||| || |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||||||||| |
|
|
| T |
44306241 |
ctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaaca |
44306148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 13893715 - 13893809
Alignment:
| Q |
1 |
ctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaaca |
95 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| || ||| ||||||||||||| |
|
|
| T |
13893715 |
ctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttgatgaaca |
13893809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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