View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1983_low_2 (Length: 608)

Name: NF1983_low_2
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1983_low_2
NF1983_low_2
[»] chr7 (4 HSPs)
chr7 (291-591)||(42922361-42922661)
chr7 (14-264)||(42922654-42922905)
chr7 (323-379)||(15106212-15106268)
chr7 (323-379)||(23298556-23298612)
[»] chr5 (3 HSPs)
chr5 (297-591)||(4802196-4802502)
chr5 (323-382)||(33555952-33556011)
chr5 (210-264)||(4802143-4802197)
[»] chr8 (8 HSPs)
chr8 (291-587)||(19252303-19252605)
chr8 (291-587)||(19325487-19325789)
chr8 (291-591)||(3753481-3753795)
chr8 (448-591)||(45287489-45287632)
chr8 (210-264)||(19252598-19252652)
chr8 (210-264)||(19325782-19325836)
chr8 (210-264)||(3753788-3753842)
chr8 (210-256)||(27002485-27002531)
[»] chr1 (5 HSPs)
chr1 (291-591)||(47388080-47388394)
chr1 (216-264)||(47387957-47388005)
chr1 (291-343)||(47387998-47388050)
chr1 (230-264)||(47388053-47388087)
chr1 (323-379)||(10692916-10692972)
[»] chr6 (5 HSPs)
chr6 (291-591)||(34325479-34325792)
chr6 (538-591)||(22976896-22976949)
chr6 (538-591)||(23811453-23811506)
chr6 (538-591)||(2625993-2626046)
chr6 (210-264)||(34325785-34325839)
[»] chr2 (2 HSPs)
chr2 (412-591)||(30922122-30922301)
chr2 (469-579)||(33652391-33652501)
[»] scaffold0103 (1 HSPs)
scaffold0103 (538-591)||(11736-11789)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 291 - 591
Target Start/End: Complemental strand, 42922661 - 42922361
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctattt 390  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||    
T  42922661 cccaaacatataaatttaaaaaactatgaagtatcaatttagttttaaatagaatactgctcatataatagttacattataataacataccatcctattt 42922562  T
Q  391 tgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacatggaaaatgtattat 490  Q
    ||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42922561 tgatattatatttgtccattgacgggttgaattacgtatattgtaaaaaatttgttctaaaggaaaatattattattccaaaacatggaaaatgtattat 42922462  T
Q  491 acttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgac 590  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  42922461 acttggtatccttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagctagaaactatctataatcttccacatgac 42922362  T
Q  591 t 591  Q
    |    
T  42922361 t 42922361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 42922905 - 42922654
Alignment:
Q  14 aaataattgttgtatttcttctattctgcagtcaattcatgtgtttgttaagatctggtatatttatggtttgaccaaaccatgtcaatgcatggcatcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42922905 aaataattgttgtatttcttctattctgcagtcaattcatgtgtttgttaagatctggtatatttatggtttgaccaaaccatgtcaatgcatggcatag 42922806  T
Q  114 taataaacggggttacctgaataagatgaatcttatggggccttatttgttaagcatatgctatagtattttgatacgggttgtatta-nnnnnnnngga 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  42922805 taataaacggggttacatgaataagatgaatcttatggggccttatttgttaagcatatgctatagtattttgatacgggttgtattatctttttttgga 42922706  T
Q  213 aaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42922705 aaattttgttattgaggaatagattattagagacaaacatagatcccaaaca 42922654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 15106268 - 15106212
Alignment:
Q  323 atcaacttagttttaaatagattactactcatataatagttacattgtaataacata 379  Q
    |||||||||||| |||||||| ||||||| ||||| |||| ||||| ||||||||||    
T  15106268 atcaacttagttgtaaatagaatactactaatatagtagtaacattataataacata 15106212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 23298556 - 23298612
Alignment:
Q  323 atcaacttagttttaaatagattactactcatataatagttacattgtaataacata 379  Q
    |||||||||||| |||||||| ||||||| |||||  ||| ||||| ||||||||||    
T  23298556 atcaacttagttgtaaatagaatactactaatatagcagtaacattataataacata 23298612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 297 - 591
Target Start/End: Original strand, 4802196 - 4802502
Alignment:
Q  297 catataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctat-------- 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||| ||||||||            
T  4802196 catataaatctaaaaaaccatgaagtatcaacttagttttaaatagaatactactcata--atagttacattataataacataccatcctatcattaata 4802293  T
Q  389 ------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacatggaaaa 482  Q
          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||    
T  4802294 tatacttttgatattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaagaaaatattattattccaaaacatggaaaa 4802393  T
Q  483 tgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctacaatcttc 582  Q
    |||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4802394 tgtattatacttggtatccttccttgatatgatagcaatttcaatccacatggtcttattcttataaggtgtgagaagctagaaactatctacaatcttc 4802493  T
Q  583 cacatgact 591  Q
    ||| |||||    
T  4802494 cacgtgact 4802502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 33556011 - 33555952
Alignment:
Q  323 atcaacttagttttaaatagattactactcatataatagttacattgtaataacatatca 382  Q
    |||||||||||| |||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  33556011 atcaacttagttgtaaatagaatactactaatataatagtaacattataataacatatca 33555952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 4802143 - 4802197
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||    
T  4802143 ggaaaattttgttataaaggaatagattattagagacaaacatagatcacaaaca 4802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 291 - 587
Target Start/End: Complemental strand, 19252605 - 19252303
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctat-- 388  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||      
T  19252605 cccaaacatataaatctaaaaaaccatgaagtatcaacttagttttaaatagaatactactcatataatagttacattataataacataccatcctatca 19252506  T
Q  389 ------------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacat 476  Q
                ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||       
T  19252505 ttaatatatacttttgatattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaggaaaatattattattccaaaa--- 19252409  T
Q  477 ggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctaca 576  Q
         ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19252408 -----atgtattatgcttggtatccttccttagtatgatagcaattccaatccacatggtcttattgttataaggtgtgagaagttagaaactatctaca 19252314  T
Q  577 atcttccacat 587  Q
    |||||||||||    
T  19252313 atcttccacat 19252303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 291 - 587
Target Start/End: Complemental strand, 19325789 - 19325487
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctat-- 388  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||      
T  19325789 cccaaacatataaatctaaaaaaccatgaagtatcaacttagttttaaatagaatactactcatataatagttacattataataacataccatcctatca 19325690  T
Q  389 ------------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacat 476  Q
                ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||       
T  19325689 ttaatatatacttttgatattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaggaaaatattattattccaaaa--- 19325593  T
Q  477 ggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctaca 576  Q
         ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19325592 -----atgtattatgcttggtatccttccttagtatgatagcaattccaatccacatggtcttattgttataaggtgtgagaagttagaaactatctaca 19325498  T
Q  577 atcttccacat 587  Q
    |||||||||||    
T  19325497 atcttccacat 19325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 291 - 591
Target Start/End: Complemental strand, 3753795 - 3753481
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctat-- 388  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||  ||  |||      
T  3753795 cccaaacatataaatttaaaaaaccgtgaagtatcaacttagttttaaatagaatactattcgtataatagttacattataataacatactataatataa 3753696  T
Q  389 ------------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacat 476  Q
                ||||||||||||||||||||||||||||||||||||| ||| ||||       |||||||||| ||||||||||||||||||||||||    
T  3753695 ttaatatatacttttgatattatatttgtccattgacgggttgaattacatattttgttaaaaatttgttctaaatgaaaatattattattccaaaacat 3753596  T
Q  477 ggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctaca 576  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||    
T  3753595 ggaaaatgtattatacttggtatccttccttagtatgatagcaattccaatccacatggtcatattgttataaggtgtgagaagctaaaaactatctaca 3753496  T
Q  577 atcttccacatgact 591  Q
    ||||| || ||||||    
T  3753495 atctttcatatgact 3753481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 448 - 591
Target Start/End: Original strand, 45287489 - 45287632
Alignment:
Q  448 taaaggaaaatattattattccaaaacatggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttat 547  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  45287489 taaaggaaaatattattattctaaaacatggaaaatgtgttatacttggtatccttccttaatatgatagcaatttcaatccacatggtcttattcttat 45287588  T
Q  548 aaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    |||||||||| || ||||| ||||||| ||||||||||||||||    
T  45287589 aaggtgtgaggagctagaagctatctataatcttccacatgact 45287632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 19252652 - 19252598
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||||||||| | |||||||||||||||| | ||||||||||||||||||    
T  19252652 ggaaaattttgttataggggaatagattattagagataaacatagatcccaaaca 19252598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 19325836 - 19325782
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||||||||| | |||||||||||||||| | ||||||||||||||||||    
T  19325836 ggaaaattttgttataggggaatagattattagagataaacatagatcccaaaca 19325782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 3753842 - 3753788
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||||||||| || ||||||||||||| | ||||||||| ||||||||||    
T  3753842 ggaaaattttgttatagaagaatagattattaaagacaaacataaatcccaaaca 3753788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 27002485 - 27002531
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagat 256  Q
    ||||||||||||||| |||||||||||||||| | ||||||| ||||    
T  27002485 ggaaaattttgttatagaggaatagattattacagacaaacacagat 27002531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 291 - 591
Target Start/End: Original strand, 47388080 - 47388394
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatatcatcctat-- 388  Q
    ||||| ||||||||||||||||| ||| || |||||| ||||||||||||||| |||||||||||||||||||  ||| ||||| |||||||||||||      
T  47388080 cccaaacatataaatctaaaaaatcataaaatatcaatttagttttaaatagaatactactcatataatagttttattataatatcatatcatcctatca 47388179  T
Q  389 ------------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacat 476  Q
                ||||||||||||||||||||||||||  |||||||||||||||| |       |||||||||||||||||||||||||| ||||||||    
T  47388180 ttaatatatatttttgatattatatttgtccattgacgaattgaattacgtatcttctaaagaaattgttctaaaggaaaatattattatttcaaaacat 47388279  T
Q  477 ggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctaca 576  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  47388280 ggaaaatgtaatatacttggtatccttctttagtatgatagcaatttcaatccacatggtcttattcttataaggtgtgagaagctagaaactacctaca 47388379  T
Q  577 atcttccacatgact 591  Q
    |||||||||||||||    
T  47388380 atcttccacatgact 47388394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 47387957 - 47388005
Alignment:
Q  216 ttttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  47387957 ttttgttatagaggaatagattattagagacaaacatagatcccaaaca 47388005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 47387998 - 47388050
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaataga 343  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  47387998 cccaaacatataaatctaaaaaatcatgaagtatcaatttagttttaaataga 47388050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 47388053 - 47388087
Alignment:
Q  230 aatagattattagacacaaacatagatcccaaaca 264  Q
    |||||||||||||| ||||||||||||||||||||    
T  47388053 aatagattattagagacaaacatagatcccaaaca 47388087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 10692916 - 10692972
Alignment:
Q  323 atcaacttagttttaaatagattactactcatataatagttacattgtaataacata 379  Q
    |||||||||||| |||||||| ||||| | ||||| |||| ||||| ||||||||||    
T  10692916 atcaacttagttgtaaatagaatactattaatatagtagtaacattataataacata 10692972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 291 - 591
Target Start/End: Complemental strand, 34325792 - 34325479
Alignment:
Q  291 cccaatcatataaatctaaaaaaccatgaagtatcaacttagttttaaatagattactactcatataatagttacattgtaataacatat----catcct 386  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||        ||||||||||| |||||||||||    ||||||    
T  34325792 cccaaacatataaatctaaaaaactatgaagtatcaacttagttttaaatagaatacta--------atagttacattataataacatatatatcatcct 34325701  T
Q  387 at----------------tttgatattatatttgtccattgacgggttgaattacgtatcttgtnnnnnnn-ttgttctaaaggaaaatattattattcc 469  Q
    ||                ||||||||||||||||||||||||| ||||||||||||||||||||        || |||||||||||||||||||||||||    
T  34325700 atcattaatatatatatttttgatattatatttgtccattgacaggttgaattacgtatcttgtaaaaaaaattattctaaaggaaaatattattattcc 34325601  T
Q  470 aaaacatggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaact 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  34325600 aaaacatggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtatgagaagctagaaact 34325501  T
Q  570 atctacaatcttccacatgact 591  Q
    ||||||||||||||||||||||    
T  34325500 atctacaatcttccacatgact 34325479  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 22976896 - 22976949
Alignment:
Q  538 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22976896 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 22976949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 23811506 - 23811453
Alignment:
Q  538 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811506 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 23811453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 2625993 - 2626046
Alignment:
Q  538 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2625993 ttattcttataaggtgtgagaagttagaaactatctataatcttccacatgact 2626046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 34325839 - 34325785
Alignment:
Q  210 ggaaaattttgttattgaggaatagattattagacacaaacatagatcccaaaca 264  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  34325839 ggaaaattttgttatagaggaatagattattagagacaaacatagatcccaaaca 34325785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 8e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 412 - 591
Target Start/End: Original strand, 30922122 - 30922301
Alignment:
Q  412 acgggttgaattacgtatcttgtnnnnnnnttgttctaaaggaaaatattattattccaaaacatggaaaatgtattatacttggtatctttccttagta 511  Q
    |||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30922122 acgggttgaattacgtatcttgtaaaaaatttgttctaaagaaaaatattattattccaaaacatggaaaatgtattatacttggtatccttccttagta 30922221  T
Q  512 tgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  30922222 tgatagcaattccaatccacatggtcttattcttataaggtgtgagaagatagaaactatttacaatcttccacatgact 30922301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 469 - 579
Target Start/End: Original strand, 33652391 - 33652501
Alignment:
Q  469 caaaacatggaaaatgtattatacttggtatctttccttagtatgatagcaattccaatccacatggtcttattcttataaggtgtgagaagttagaaac 568  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||    
T  33652391 caaaacatggaaaatgtattatacttggtatccttccttagtatgatagcaattccaatccacatgatcttattcttataatgtgtgagaagctcgaaac 33652490  T
Q  569 tatctacaatc 579  Q
    |||||||||||    
T  33652491 tatctacaatc 33652501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 11789 - 11736
Alignment:
Q  538 ttattcttataaggtgtgagaagttagaaactatctacaatcttccacatgact 591  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11789 ttattcttataaggtctgagaagttagaaactatctacaatcttccacatgact 11736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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