View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1983_low_4 (Length: 533)
Name: NF1983_low_4
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 10889606 - 10889773
Alignment:
| Q |
19 |
ccgagcaaccaaatatatagaatcaattctacatttataaaattaattatagtctttttaattagaagtgaattcaaacatacactgtaacaacatatat |
118 |
Q |
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| T |
10889606 |
ccgagcaaccaaatatgtagaatcaattctacatttataaaattaattatagtctttttaattagaagtgaattgaaacatacactgtaacaatatatat |
10889705 |
T |
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| Q |
119 |
ctttgttgtgcattatgattagcgtgaattcgaatattttgatttgaattatataattttggagtgat |
186 |
Q |
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| T |
10889706 |
ctttgttgtgcattatgattagcgtgaattcgaatattttgatttgaattatataattttggagtgat |
10889773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 10890118 - 10890243
Alignment:
| Q |
338 |
ttatattttacaacctttgggccaagaatgtgtctctccggtctccgtcgtggcttgcaacactcctccgtctctcattttgttctttcctaaaacaaag |
437 |
Q |
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| T |
10890118 |
ttatattttacaacctttgggccaagaatgtgtctctccggtctccgtcgtggcttgcaacactcctccgtctctcattttgttctttcctaaaacaaag |
10890217 |
T |
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| Q |
438 |
attgatcttgggtttcaaacgtttac |
463 |
Q |
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| T |
10890218 |
attgatcttgagtttcaaacgtttac |
10890243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 10889832 - 10889933
Alignment:
| Q |
245 |
gaatgtcatcgattttgaatactaacccttaataaaaacacatttttacacgttgacacctggtgttctttttcaatttaaaccttgaaatctttatatt |
344 |
Q |
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| T |
10889832 |
gaatgtcatcgattttgaatactagccattaataaaaacacatttttacacgtttacacctggagttctttttcaatttaaaccttgaactctttatatt |
10889931 |
T |
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| Q |
345 |
tt |
346 |
Q |
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| T |
10889932 |
tt |
10889933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 10890268 - 10890309
Alignment:
| Q |
484 |
acatagctttgcacacaagtcataggactctatctcccacct |
525 |
Q |
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| T |
10890268 |
acatcgctttgcacacaagtcataggactctgactcccacct |
10890309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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