View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1983_low_5 (Length: 504)

Name: NF1983_low_5
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1983_low_5
NF1983_low_5
[»] chr8 (5 HSPs)
chr8 (24-150)||(42807110-42807236)
chr8 (151-275)||(42807435-42807560)
chr8 (392-440)||(42807705-42807753)
chr8 (441-504)||(39914495-39914558)
chr8 (467-504)||(36408557-36408594)
[»] chr3 (7 HSPs)
chr3 (152-275)||(31152951-31153074)
chr3 (438-504)||(22968568-22968634)
chr3 (441-504)||(6269550-6269613)
chr3 (445-504)||(22922141-22922200)
chr3 (441-504)||(19390126-19390189)
chr3 (445-504)||(34084246-34084305)
chr3 (441-504)||(39771770-39771833)
[»] chr6 (4 HSPs)
chr6 (153-266)||(25361436-25361549)
chr6 (441-502)||(13837801-13837862)
chr6 (441-504)||(398597-398660)
chr6 (440-504)||(34948882-34948946)
[»] chr7 (7 HSPs)
chr7 (441-504)||(14777231-14777294)
chr7 (441-504)||(3114220-3114283)
chr7 (441-504)||(5555467-5555530)
chr7 (445-504)||(8394109-8394168)
chr7 (445-504)||(36630800-36630859)
chr7 (476-504)||(33685579-33685607)
chr7 (469-501)||(43184595-43184627)
[»] chr2 (9 HSPs)
chr2 (441-504)||(17445163-17445226)
chr2 (441-504)||(41251758-41251821)
chr2 (51-148)||(41638034-41638134)
chr2 (441-504)||(42439966-42440029)
chr2 (434-504)||(35962688-35962758)
chr2 (441-504)||(6403928-6403991)
chr2 (441-500)||(2958228-2958287)
chr2 (441-504)||(16405580-16405643)
chr2 (441-504)||(32127265-32127328)
[»] chr5 (8 HSPs)
chr5 (444-504)||(13817960-13818020)
chr5 (441-504)||(3155755-3155818)
chr5 (441-504)||(26283442-26283505)
chr5 (444-504)||(10033910-10033970)
chr5 (441-501)||(39434676-39434736)
chr5 (444-497)||(14316641-14316694)
chr5 (445-502)||(1776502-1776559)
chr5 (441-502)||(36293747-36293808)
[»] scaffold2142 (1 HSPs)
scaffold2142 (441-504)||(502-565)
[»] scaffold0069 (1 HSPs)
scaffold0069 (441-504)||(17822-17885)
[»] scaffold0002 (1 HSPs)
scaffold0002 (440-504)||(480581-480645)
[»] chr1 (6 HSPs)
chr1 (440-504)||(26144234-26144298)
chr1 (214-266)||(27754163-27754211)
chr1 (439-504)||(42311065-42311130)
chr1 (441-499)||(23313218-23313276)
chr1 (395-440)||(34503087-34503132)
chr1 (448-504)||(32982180-32982236)
[»] chr4 (9 HSPs)
chr4 (441-504)||(13012168-13012231)
chr4 (441-504)||(20129290-20129353)
chr4 (441-504)||(47500753-47500816)
chr4 (439-504)||(29319829-29319894)
chr4 (444-504)||(6235515-6235575)
chr4 (440-504)||(34407408-34407472)
chr4 (441-504)||(25930688-25930751)
chr4 (441-504)||(26439403-26439466)
chr4 (445-504)||(36382469-36382528)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 42807110 - 42807236
Alignment:
Q  24 agcctgaatgaaaagaaatataagaactaaaaatcttgaaattagattcatggtcaaaccaaactttgctacacatcaaccacctaaatggtttctctag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42807110 agcctgaatgaaaagaaatataagaactaaaaatcttgaaattagattcatggtcaaaccaaactttgctacacatcaaccacctaaatggtttctctag 42807209  T
Q  124 gctatgattccaaacgaccaaacctaa 150  Q
    |||||||||||||||||||||||||||    
T  42807210 gctatgattccaaacgaccaaacctaa 42807236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 42807435 - 42807560
Alignment:
Q  151 attgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggat-agttttgtaaatttgtttctactcgtttatttaacaaacaa 249  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  42807435 attgtattttaccaaaaaatcactatctactattttaaactagtattaactaaaggattagttttgtaaatttgtttctactcatttatttaacaaacaa 42807534  T
Q  250 caacaaaggttgttacagatctcatg 275  Q
    ||||||||||||||||||||||||||    
T  42807535 caacaaaggttgttacagatctcatg 42807560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 42807705 - 42807753
Alignment:
Q  392 attaatgttcctccttttgttcccgccatgtatcgaaattaattggaag 440  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42807705 attaatgttcctccttttgttcccggcatgtatcgaaattaattggaag 42807753  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 39914495 - 39914558
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||| |||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 39914558  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 36408557 - 36408594
Alignment:
Q  467 ctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  36408557 ctcgggcggtcgcccgggctcgatcgataatttttgca 36408594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 31152951 - 31153074
Alignment:
Q  152 ttgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggatagttttgtaaatttgtttctactcgtttatttaacaaacaaca 251  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31152951 ttgtattttactaaaaaaccactatctactattttaaactagtattaactaaaggatagttttgtaaatttgtttctgctcatttatttaacaaacaaca 31153050  T
Q  252 acaaaggttgttacagatctcatg 275  Q
    ||||||||||||||| ||| ||||    
T  31153051 acaaaggttgttacaaatcccatg 31153074  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 504
Target Start/End: Complemental strand, 22968634 - 22968568
Alignment:
Q  438 aagcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||||||||||| | || | |||||| |||  ||||||||||||||||||||||||    
T  22968634 aagcatgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgca 22968568  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 6269613 - 6269550
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||| | |||| |||||| |||  ||| ||||||||||||||||||||    
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgca 6269550  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 22922141 - 22922200
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||| ||||| ||| |||| |||||| ||||||||||||||||||| |||||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgca 22922200  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 19390126 - 19390189
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||| ||||||||||||||| || | |||||| |||  |||| |||||||||||||||||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgca 19390189  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 34084305 - 34084246
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| || | |||||| |||| ||| ||||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgca 34084246  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 39771770 - 39771833
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| |||||||| |||||||||||||||    
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgca 39771833  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 25361436 - 25361549
Alignment:
Q  153 tgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggatagttttgtaaatttgtttctactcgtttatttaacaaacaacaa 252  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  25361436 tgtattttaccaaaaaaccactatctactattttaaactagtgttaattaaaggatagttttgtaaatttatttctactaatttatttaacaaacaacaa 25361535  T
Q  253 caaaggttgttaca 266  Q
    |||||||| |||||    
T  25361536 caaaggtttttaca 25361549  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 13837801 - 13837862
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttg 502  Q
    |||||||||||||||||| ||| || | |||||||||||||||| |||||||||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 398597 - 398660
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 398660  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 34948946 - 34948882
Alignment:
Q  440 gcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||||||| ||| || | | |||| |||| | ||||||||||||||||||||||    
T  34948946 gcatgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgca 34948882  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 14777294 - 14777231
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgca 14777231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 3114283 - 3114220
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||| |||||| | ||| || |||| ||||||||||||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgca 3114220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 5555467 - 5555530
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||| ||| || | |||||| |||| ||||||||||||||||||||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgca 5555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 8394109 - 8394168
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| || | |||||| |||| ||||||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgca 8394168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 36630800 - 36630859
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| || | ||| || |||| ||||||||||||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgca 36630859  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 504
Target Start/End: Original strand, 33685579 - 33685607
Alignment:
Q  476 tcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||||||||||||    
T  33685579 tcgctcgggctcgatcgataatttttgca 33685607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 43184627 - 43184595
Alignment:
Q  469 cgggcgatcgctcgggctcgatcgataattttt 501  Q
    |||||| ||||||||||||||||||||||||||    
T  43184627 cgggcggtcgctcgggctcgatcgataattttt 43184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 17445226 - 17445163
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||||| || |||||||| |||| || |||||||||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgca 17445163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 41251821 - 41251758
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||| |||| | |||||| |||| ||||||||||||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgca 41251758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 41638034 - 41638134
Alignment:
Q  51 taaaaatcttgaaat-tagattcatggtcaaaccaaactttgctacac-atcaaccacctaaatggtttctct-aggctatgattccaaacgaccaaacc 147  Q
    ||||||||||||||| |||||| |||||||||||||||||||||  || ||||||||||||| ||| |||||| || | |||||| ||||| ||||||||    
T  41638034 taaaaatcttgaaatctagattgatggtcaaaccaaactttgctggacgatcaaccacctaattggcttctctgagccaatgatttcaaacaaccaaacc 41638133  T
Q  148 t 148  Q
    |    
T  41638134 t 41638134  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 42439966 - 42440029
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||| ||| || | |||||| |||| ||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgca 42440029  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 35962688 - 35962758
Alignment:
Q  434 ttggaagcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||||||||||||| ||| || | | |||| |||  ||||||||||||||||||||||||    
T  35962688 ttggaagcatgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgca 35962758  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 6403991 - 6403928
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 6403928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttt 500  Q
    |||||||||||||||||| ||| || | |||||| |||  ||||||||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 16405580 - 16405643
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||| | |||||| |  ||||| |||| ||||||| ||||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgca 16405643  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 32127328 - 32127265
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| ||| || | |||||| |||| ||||||||||| ||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgca 32127265  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 13817960 - 13818020
Alignment:
Q  444 gggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||| ||| || | |||||| |||||||||||||||||||||||||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgca 13818020  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 3155818 - 3155755
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| ||| |||| |||||| |||||||||||||||| ||||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgca 3155755  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 26283505 - 26283442
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || |||||||| |||| ||||||||||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgca 26283442  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 10033910 - 10033970
Alignment:
Q  444 gggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||| ||| || | ||| ||||||| ||||||||||||||||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgca 10033970  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 501
Target Start/End: Original strand, 39434676 - 39434736
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataattttt 501  Q
    |||||||||||||||||||||| || |  ||||| |||| |||||||||||||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttt 39434736  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  444 gggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataat 497  Q
    ||||||||||||||| ||| ||||||||||| |||| | |||||||||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 1776559 - 1776502
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttg 502  Q
    |||||||||||||| ||  || | |||||| |||| ||||||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttg 1776502  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 36293808 - 36293747
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttg 502  Q
    |||||||||||||||||||||| || | || ||| |||  ||| ||||||||||||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttg 36293747  T

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Target: scaffold2142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 502 - 565
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | |||| |||||| |||| ||||||||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgca 565  T

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Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 17822 - 17885
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||||| || | || |||||||  ||||||||||||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgca 17885  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 480645 - 480581
Alignment:
Q  440 gcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  480645 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 480581  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 26144234 - 26144298
Alignment:
Q  440 gcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  26144234 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 26144298  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 27754211 - 27754163
Alignment:
Q  214 tgtaaatttgtttctactcgtttatttaacaaacaacaacaaaggttgttaca 266  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  27754211 tgtaaatttgtttctactc----atttaacaaacaacaacaaaggttgttaca 27754163  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 42311130 - 42311065
Alignment:
Q  439 agcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||| ||||||||||||||| ||| || | | | ||||||| ||||||||||||||||||||||||    
T  42311130 agcaggggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgca 42311065  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 23313218 - 23313276
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataattt 499  Q
    |||||||||||||||||| ||| ||||||||||| | || |||||||||| ||| ||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgattt 23313276  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 34503132 - 34503087
Alignment:
Q  395 aatgttcctccttttgttcccgccatgtatcgaaattaattggaag 440  Q
    |||||||||||||||||||||  |||| |||||| |||||||||||    
T  34503132 aatgttcctccttttgttcccagcatgcatcgaagttaattggaag 34503087  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 32982236 - 32982180
Alignment:
Q  448 ggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||| ||| || | |||||| |||| ||||| ||||||||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgca 32982180  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 13012168 - 13012231
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 13012231  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 20129290 - 20129353
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 20129353  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 47500753 - 47500816
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| ||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgca 47500816  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 29319894 - 29319829
Alignment:
Q  439 agcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||||| |||||| | | |||| |||  | ||||||||||||||||||||||    
T  29319894 agcatgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgca 29319829  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 6235515 - 6235575
Alignment:
Q  444 gggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||||| ||| |||   ||||| |||||||||||||| ||||||||||||||    
T  6235515 gggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgca 6235575  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 34407472 - 34407408
Alignment:
Q  440 gcatgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    ||||||||||||| ||||||| | || | |||||| |||| |||||||| |||||||||||||||    
T  34407472 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgca 34407408  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 25930688 - 25930751
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||||||| ||| || |  ||||| |||| ||||||||||| ||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgca 25930751  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 26439466 - 26439403
Alignment:
Q  441 catgggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||| ||||||| | || | |||||| |||| |||||||| |||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgca 26439403  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 36382528 - 36382469
Alignment:
Q  445 ggcggttctaccgtgtggtgatctcgggcgatcgctcgggctcgatcgataatttttgca 504  Q
    |||||||||||||| ||| || | |||||| |||| ||||||||||| ||||||||||||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgca 36382469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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