View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1983_low_7 (Length: 475)
Name: NF1983_low_7
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 64 - 373
Target Start/End: Complemental strand, 17032710 - 17032405
Alignment:
| Q |
64 |
aaaagctttatatattaaaaccatgggatccccgaacttttatttccgtcacattccttcaccaccacctcaatttccctcagtgagaacggtgcaatca |
163 |
Q |
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| T |
17032710 |
aaaagttttatatattaaaaccatgggatccccgaacttttattttcgtcacattccttcaccaccacctcaatttccctcattgagaacggtgcaatca |
17032611 |
T |
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| Q |
164 |
atcatctattgctcaacttgcctcttaaaatagacgggtctttacagcaacatgggtcttgaaatcatgtgatgtgagtatggaatatgtctaaagccat |
263 |
Q |
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| T |
17032610 |
atcatctattgctc-----gcctcttaaaatagacgggtctttgcagcaacatgggtcttgaaatcatgtgacgtgagtatggaatatatctaaagccat |
17032516 |
T |
|
| Q |
264 |
ggatgaatataagtgtatgttacattgactctgctcttctttggaatatagtcaaccgtaa-tttattcataattaatatttacttgaattttaaaattc |
362 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
17032515 |
ggatgaatataagtgtatgttacattgactctgcttttctttggaatataatcaaccgtaattttattcataattaatatttacttgatttttacaattc |
17032416 |
T |
|
| Q |
363 |
atacatgacag |
373 |
Q |
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||||||||||| |
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| T |
17032415 |
atacatgacag |
17032405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 209 - 422
Target Start/End: Complemental strand, 17043517 - 17043308
Alignment:
| Q |
209 |
agcaacatgggtcttgaaatcatgtgatgtgagtatggaatatgtctaaagccatggatgaatataagtgtatgttacattgactctgctcttctttgga |
308 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||| | || |
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| T |
17043517 |
agcaacatgggtcttgaaatcatgtgatatgagcatggaatatatctaaagccatggatgaatataagtgtatgtttcattgactcatcttttctattga |
17043418 |
T |
|
| Q |
309 |
atatagtcaaccgtaa-tttattcataattaatatttacttgaattttaaaattcatacatgacagcccaggaccataaaaaattgagggaccttttctt |
407 |
Q |
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| T |
17043417 |
atataatcaaccataattttattgataattaatatttacttgaattttacaattcatacgtga-----catgatcttaaaaaattgagggaccttttctt |
17043323 |
T |
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| Q |
408 |
ccatttaaaagattt |
422 |
Q |
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||||||| ||||||| |
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| T |
17043322 |
ccatttagaagattt |
17043308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 17040487 - 17040358
Alignment:
| Q |
212 |
aacatgggtcttgaaatcatgtgatgtgagtatggaatatgtctaaagccatggatgaatataagtgtatgttacattgactctgctcttctttggaata |
311 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |
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| T |
17040487 |
aacatgggtcttgaaatcatgtgatgtgagcatgggatatatctaaagccatggatgaatataagtgtatgtttcattgactctgattttctttagaata |
17040388 |
T |
|
| Q |
312 |
tagtcaaccgtaa-tttattcataattaat |
340 |
Q |
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| T |
17040387 |
taatcaaccgtaattttattgataattaat |
17040358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 17040151 - 17040077
Alignment:
| Q |
335 |
attaatatttacttgaattttaaaattcatacatgacagcccaggaccataaaaaattgagggaccttttcttccattta |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
17040151 |
attaatatttacttgaattttacaattcatacatga-----caggactataataaattgagggaccttttcttccattta |
17040077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 16995201 - 16995139
Alignment:
| Q |
217 |
gggtcttgaaatcatgtgatgtgagtatggaatatgtctaaagccatggatgaatataagtgt |
279 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||| |
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| T |
16995201 |
gggtcttgaaatcatgtgatgtgagcatggaatatatctaaagccatggatgaaaatgagtgt |
16995139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 17032763 - 17032731
Alignment:
| Q |
13 |
aatatttgaatatcatgtttcaaaagataccaa |
45 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17032763 |
aatatttgaatatcatgtttcaaaagataccaa |
17032731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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